Motif IL_65718.2 Version IL_65718.2 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-3 | 2-8 | 3-8 | 4-7 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_068 | 4LFB | 0.1049 | 0 | A | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | 5MC | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 2 | IL_8P9A_453 | 8P9A | 0.0837 | 0 | sR | SSU rRNA | G | 1760 | U | 1761 | A | 1762 | A | 1763 | C | 1764 | * | G | 1638 | C | 1639 | C | 1640 | C | 1641 | cWW | cSH | cWS | cWW | cWW | |
| 3 | IL_8C3A_471 | 8C3A | 0.0939 | 0 | CM | SSU rRNA | G | 1747 | U | 1748 | A | 1749 | A | 1750 | C | 1751 | * | G | 1625 | C | 1626 | C | 1627 | C | 1628 | cWW | cSH | cWS | cWW | cWW | |
| 4 | IL_5J7L_059 | 5J7L | 0.0000 | 0 | AA | SSU rRNA | G | 1497 | UR3 | 1498 | A | 1499 | A | 1500 | C | 1501 | * | G | 1401 | 4OC | 1402 | C | 1403 | C | 1404 | cWW | cSH | cWS | cWW | cWW | |
| 5 | IL_6CZR_368 | 6CZR | 0.1048 | 0 | 1a | SSU rRNA | G | 1475 | UR3 | 1476 | A | 1477 | A | 1478 | C | 1479 | * | G | 1384 | 4OC | 1385 | C | 1386 | 5MC | 1387 | cWW | ncSH | cWS | cWW | cWW | |
| 6 | IL_9DFE_108 | 9DFE | 0.7529 | 0 | 1A | LSU rRNA | C | 2870 | C | 2871 | G | 2872 | A | 2873 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | cSW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| G(UR3)AAC*G(4OC)C(5MC) | 2 |
| GUAAC*GCCC | 2 |
| G(UR3)AAC*G(4OC)CC | 1 |
| CCGAC*GGGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| (UR3)AA*(4OC)C | 3 |
| UAA*CC | 2 |
| CGA*GG | 1 |
- Annotations
-
- (6)
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.27 | Max 0.79
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