Motif IL_65768.1 Version IL_65768.1 of this group appears in releases 0.2 to 0.3
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-8 | 5-10 | 6-7 | 6-11 | 7-8 | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1FJG_031 | 1FJG | 0.0000 | 1 | Kink-turn (H) | A | SSU rRNA | G | 683 | A | 684 | G | 685 | U | 686 | A | 687 | G | 688 | * | C | 699 | G | 700 | C | 701 | G | 703 | A | 704 | U | 705 | A | 706 | C | 707 | cWW | ncwW | tSH | tWH | tSs | tHS | cWW | ntsS | |
2 | IL_1LNG_003 | 1LNG | 1.1332 | 0 | B | SRP S RNA | G | 215 | A | 216 | G | 217 | C | 218 | A | 219 | A | 220 | * | C | 221 | G | 200 | C | 201 | C | 202 | A | 203 | G | 204 | G | 205 | C | 206 | cWW | cWW | tSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAGUAG*CGCAGAUAC | 1 |
GAGCAAC*GCCAGGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AGUA*GCAGAUA | 1 |
AGCAA*CCAGG | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_65768.1 | Only in the parent motif |
---|---|---|---|
IL_90243.1 Compare | IL_1LNG_003 | IL_1FJG_031 | |
IL_20940.1 Compare | IL_1FJG_031 | IL_1LNG_003 |
Children motifs
Child motif | Common motif instances | Only in IL_65768.1 | Only in the child motif |
---|---|---|---|
IL_31793.1 Compare | IL_1FJG_031 | IL_1LNG_003 | |
IL_90238.1 Compare | IL_1LNG_003 | IL_1FJG_031 | IL_2OIU_002 |
- Annotations
-
- Kink-turn (H) (1)
- (1)
- Basepair signature
- Heat map statistics
- Min 1.13 | Avg 0.57 | Max 1.13
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