#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 11 12 13 141-142-133-124-115-85-106-76-117-8
1 IL_1FJG_0311FJG0.00001Kink-turn (H)A SSU rRNAG683A684G685U686A687G688*C699G700C701G703A704U705A706C707cWWncwWtSHtWHtSstHScWWntsS
2 IL_1LNG_0031LNG1.13320B SRP S RNAG215A216G217C218A219A220*C221G200C201C202A203G204G205C206cWWcWWtSHtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGUAG*CGCAGAUAC1
GAGCAAC*GCCAGGC1
Non-Watson-Crick part of the motif
SequenceCounts
AGUA*GCAGAUA1
AGCAA*CCAGG1

Release history

Release0.20.3
Date2011-12-082011-12-08
StatusNew id, 2 parentsExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_65768.1Only in the parent motif
IL_90243.1
Compare
IL_1LNG_003IL_1FJG_031
IL_20940.1
Compare
IL_1FJG_031IL_1LNG_003

Children motifs

Child motifCommon motif instancesOnly in IL_65768.1Only in the child motif
IL_31793.1
Compare
IL_1FJG_031IL_1LNG_003
IL_90238.1
Compare
IL_1LNG_003IL_1FJG_031IL_2OIU_002
Annotations
  • Kink-turn (H) (1)
  • (1)
  • Basepair signature
    Heat map statistics
    Min 1.13 | Avg 0.57 | Max 1.13
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.1275 s