Motif IL_65851.3 Version IL_65851.3 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3KTW_004 | 3KTW | 0.0000 | 0 | tSH-tHW-tHS with extra cWW pairs | C | SRP RNA | G | 201 | C | 202 | C | 203 | A | 204 | G | 205 | G | 206 | C | 207 | * | G | 216 | A | 217 | G | 218 | C | 219 | A | 220 | A | 221 | C | 222 | cWW | ntWH | tSH | tHW | ntHS | cWW | cWW | |
| 2 | IL_3NDB_008 | 3NDB | 0.2410 | 0 | M | SRP RNA | G | 200 | C | 201 | C | 202 | A | 203 | G | 204 | G | 205 | C | 206 | * | G | 215 | A | 216 | G | 217 | C | 218 | A | 219 | A | 220 | C | 221 | cWW | cWW | ntWH | ntSH | tHW | tHS | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCAGGC*GAGCAAC | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCAGG*AGCAA | 2 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tHW-tHS with extra cWW pairs (1)
- (1)
- Basepair signature
- cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L
- Heat map statistics
- Min 0.24 | Avg 0.12 | Max 0.24
Coloring options: