#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-4
1 IL_3F1H_0853F1H0.45562A23S RRNAC2297A2298G2299*C2317G2318G2321cWWntHScWW
2 IL_1S72_0781S720.406220 LSU rRNAC2331A2332G2333*C2351G2352G2355cWWtHScWW
3 IL_3F1H_0793F1H0.28741A23S RRNAC2081A2082G2083*C2236G2237G2239cWWtHScWW
4 IL_1S72_0761S720.29971Isolated tHS basepair with bulges (H)0 LSU rRNAC2122A2123G2124*C2269G2270G2272cWWtHScWW
5 IL_3F1H_0113F1H0.34971A23S RRNAC288A289G290*U350G351G353cWWtHScWW
6 IL_2ZJR_0782ZJR0.00001Isolated tHS basepair with bulges (H)X LSU rRNAU2064A2065G2066*C2215G2216G2218cWWntHScWW
7 IL_1L9A_0041L9A0.43160Isolated tHS basepair with bulgesBsignal recognition particle RNA S domainU132A133U134*A163G164G165ncWWacWWtHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGGG2
CAG*CGGAG1
CAG*CGAAG1
CAG*UGGG1
UAG*CGGG1
UAU*AGG1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG4
A*GGA1
A*GAA1
A*G1

Release history

Release0.1
Date2011-12-08
StatusNew id, no parents

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_65962.1Only in the child motif
IL_65962.2
Compare
IL_1S72_076, IL_2ZJR_078, IL_3F1H_079, IL_3F1H_011, IL_1L9A_004IL_3F1H_085, IL_1S72_078
IL_90629.1
Compare
IL_3F1H_085IL_1L9A_004, IL_3F1H_011, IL_2ZJR_078, IL_1S72_078, IL_1S72_076, IL_3F1H_079IL_2ZJR_019, IL_2ZJR_013, IL_2ZJR_010, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_1O9M_004, IL_1O9M_003, IL_1S72_047, IL_405D_002, IL_405D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2O3Y_004, IL_2O3Y_001, IL_3F1H_024, IL_1FJG_058, IL_3NJ6_002, IL_2O3X_004, IL_1Z7F_002, IL_1FJG_056, IL_1Z7F_001, IL_3F1H_062, IL_3BNL_004, IL_3BNL_001, IL_3BNL_002, IL_2ZJR_090, IL_3CUN_002, IL_3F1H_080, IL_3F1H_081, IL_2ZJR_036, IL_2ZJR_030, IL_2QEK_001, IL_1FJG_044, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3F1H_014, IL_2O3V_001, IL_3NJ7_001, IL_2ZJR_025, IL_3NJ7_002, IL_3NJ7_003, IL_2ZJR_029, IL_3NJ7_006, IL_3NJ7_004, IL_3NJ7_005, IL_3BNQ_012, IL_1KFO_003, IL_1KFO_002, IL_3F1H_039, IL_5MSF_001, IL_5MSF_002, IL_2ZJR_053, IL_1FJG_062, IL_1S72_085, IL_3BNQ_001, IL_3BNQ_006, IL_3BNQ_007, IL_3F1H_033, IL_2ZI0_001, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3BNT_006, IL_3BNT_001, IL_157D_002, IL_1MWL_004, IL_157D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1T0D_004, IL_3F1H_016, IL_1S72_095, IL_1FJG_010, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_2ZJR_100, IL_2ZJR_107, IL_1RPU_001, IL_1YZ9_001, IL_1FJG_006, IL_3F1H_094, IL_2OE5_001, IL_3E5C_001, IL_3MEI_002, IL_2ZJR_042, IL_2Q1R_001, IL_1S72_024, IL_1L9A_007, IL_3F1H_054, IL_3GLP_002, IL_3GLP_003, IL_3NJ6_001, IL_3GLP_001, IL_3GLP_004, IL_3FO4_001, IL_1XJR_003, IL_1ZX7_008, IL_1ZX7_006, IL_1ZX7_004, IL_1ZX7_002, IL_3HL2_002, IL_2Q1R_002, IL_2ZJR_079, IL_3F1H_043, IL_3F1H_113, IL_3HHN_004, IL_3HHN_002
IL_58602.1
Compare
IL_1S72_078IL_3F1H_085, IL_1L9A_004, IL_3F1H_011, IL_2ZJR_078, IL_1S72_076, IL_3F1H_079IL_3D2V_006, IL_3D2V_003, IL_1DUQ_003, IL_2GDI_008, IL_1DUQ_007, IL_2GDI_004
Annotations
  • (4)
  • Isolated tHS basepair with bulges (H) (2)
  • Isolated tHS basepair with bulges (1)
  • Basepair signature
    Heat map statistics
    Min 0.11 | Avg 0.29 | Max 0.61
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