Motif IL_65962.2 Version IL_65962.2 of this group appears in releases 0.2 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-5 | 1-6 | 2-5 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1L9A_004 | 1L9A | 0.0000 | 0 | Isolated tHS basepair with bulges | B | signal recognition particle RNA S domain | U | 132 | A | 133 | U | 134 | * | A | 163 | G | 164 | G | 165 | ncWWa | cWW | tHS | ncWW |
2 | IL_2ZJR_078 | 2ZJR | 0.4122 | 1 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | U | 2064 | A | 2065 | G | 2066 | * | C | 2215 | G | 2216 | G | 2218 | cWW | ntHS | cWW | |
3 | IL_1S72_076 | 1S72 | 0.4026 | 1 | Isolated tHS basepair with bulges (H) | 0 | LSU rRNA | C | 2122 | A | 2123 | G | 2124 | * | C | 2269 | G | 2270 | G | 2272 | cWW | tHS | cWW | |
4 | IL_3F1H_079 | 3F1H | 0.4357 | 1 | A | 23S RRNA | C | 2081 | A | 2082 | G | 2083 | * | C | 2236 | G | 2237 | G | 2239 | cWW | tHS | cWW | ||
5 | IL_3F1H_011 | 3F1H | 0.4316 | 1 | A | 23S RRNA | C | 288 | A | 289 | G | 290 | * | U | 350 | G | 351 | G | 353 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CAG*CGGG | 2 |
UAU*AGG | 1 |
UAG*CGGG | 1 |
CAG*UGGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*GG | 4 |
A*G | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_65962.2 | Only in the parent motif |
---|---|---|---|
IL_65962.1 Compare | IL_1S72_076, IL_2ZJR_078, IL_3F1H_079, IL_3F1H_011, IL_1L9A_004 | IL_3F1H_085, IL_1S72_078 |
Children motifs
Child motif | Common motif instances | Only in IL_65962.2 | Only in the child motif |
---|---|---|---|
IL_47067.1 Compare | IL_1S72_076, IL_2ZJR_078 | IL_1L9A_004, IL_3F1H_079, IL_3F1H_011 | IL_3PYO_074, IL_3PYO_076, IL_3O58_116, IL_2ZJR_081, IL_1S72_078, IL_3PYO_011, IL_2QBG_082 |
- Annotations
-
- Isolated tHS basepair with bulges (H) (2)
- (2)
- Isolated tHS basepair with bulges (1)
- Basepair signature
- Heat map statistics
- Min 0.11 | Avg 0.25 | Max 0.44
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