#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-51-62-53-4
1 IL_1L9A_0041L9A0.00000Isolated tHS basepair with bulgesBsignal recognition particle RNA S domainU132A133U134*A163G164G165ncWWacWWtHSncWW
2 IL_2ZJR_0782ZJR0.41221Isolated tHS basepair with bulges (H)X LSU rRNAU2064A2065G2066*C2215G2216G2218cWWntHScWW
3 IL_1S72_0761S720.40261Isolated tHS basepair with bulges (H)0 LSU rRNAC2122A2123G2124*C2269G2270G2272cWWtHScWW
4 IL_3F1H_0793F1H0.43571A23S RRNAC2081A2082G2083*C2236G2237G2239cWWtHScWW
5 IL_3F1H_0113F1H0.43161A23S RRNAC288A289G290*U350G351G353cWWtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAG*CGGG2
UAU*AGG1
UAG*CGGG1
CAG*UGGG1
Non-Watson-Crick part of the motif
SequenceCounts
A*GG4
A*G1

Release history

Release0.20.30.4
Date2011-12-082011-12-082011-12-08
StatusUpdated, 1 parentExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_65962.2Only in the parent motif
IL_65962.1
Compare
IL_1S72_076, IL_2ZJR_078, IL_3F1H_079, IL_3F1H_011, IL_1L9A_004IL_3F1H_085, IL_1S72_078

Children motifs

Child motifCommon motif instancesOnly in IL_65962.2Only in the child motif
IL_47067.1
Compare
IL_1S72_076, IL_2ZJR_078IL_1L9A_004, IL_3F1H_079, IL_3F1H_011IL_3PYO_074, IL_3PYO_076, IL_3O58_116, IL_2ZJR_081, IL_1S72_078, IL_3PYO_011, IL_2QBG_082
Annotations
  • Isolated tHS basepair with bulges (H) (2)
  • (2)
  • Isolated tHS basepair with bulges (1)
  • Basepair signature
    Heat map statistics
    Min 0.11 | Avg 0.25 | Max 0.44
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