IL_66635.5

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5	1-5	3-4
1	IL_3DD2_003	3DD2	0.5535	1	Major groove intercalation	B	RNA (26-MER)	G	16	A	18	CFL	19	*	G	10	CFL	11	cWW	cWW
2	IL_4WF9_106	4WF9	0.3219	0	Major groove intercalation	X	LSU rRNA	U	2898	A	2899	C	2900	*	G	2858	G	2859	cWW	cWW
3	IL_5J7L_352	5J7L	0.3155	0	Major groove intercalation	DA	LSU rRNA	U	2878	A	2879	C	2880	*	G	2838	G	2839	cWW	cWW
4	IL_7VTI_003	7VTI	0.4235	1	Major groove intercalation	B	crRNA	U	27	A	29	U	30	*	A	9	G	10	cWW	cWW
5	IL_5WT1_001	5WT1	0.2417	0	Stack outside cWW	C	tRNA	G	43	G	44	U	45	*	A	26	C	27	cWW	cWW
6	IL_9FN3_002	9FN3	0.3311	0		A	SAMURI-ProSeDMA	C	29	G	30	C	31	*	G	15	G	16	cWW	cWW
7	IL_6JQ6_004	6JQ6	0.2530	0	Stack outside cWW	U	RNA (81-MER)	U	62	G	63	C	64	*	G	31	G	32	cWW	cWW
8	IL_7A0S_067	7A0S	0.3598	1	Major groove intercalation	X	LSU rRNA	U	1881	G	1882	A	1884	*	U	1833	G	1834	cWW	cWW
9	IL_5T83_004	5T83	0.1668	1	Multiple bulged bases	A	Guanidine-I riboswitch	G	33	G	34	C	36	*	G	22	C	23	cWW	cWW
10	IL_5LYS_007	5LYS	0.1395	1	Major groove intercalation	B	7SK RNA	A	39	U	40	G	42	*	C	67	U	68	cWW	cWW
11	IL_1XOK_002	1XOK	0.1219	1	Major groove intercalation	B+A	alfalfa mosaic virus RNA 3' UTR	G	877	A	878	G	880	*	C	868	C	869	cWW	cWW
12	IL_1XOK_001	1XOK	0.1163	1	Major groove intercalation	A	alfalfa mosaic virus RNA 3' UTR	A	864	A	865	G	867	*	C	846	U	847	cWW	cWW
13	IL_6XH2_001	6XH2	0.0000	2	Major groove intercalation	D	TRANS-ACTIVATION RESPONSE ELEMENT	A	22	U	23	G	26	*	C	39	U	40	cWW	cWW
14	IL_6DLR_004	6DLR	0.0968	1	Multiple bulged bases	A	Guanidine-I riboswitch	G	36	G	37	C	39	*	G	22	C	23	cWW	cWW
15	IL_6CF2_002	6CF2	0.1281	1	Major groove intercalation	G	RNA (35-MER)	C	22	U	23	G	25	*	C	10	G	11	cWW	cWW
16	IL_9DFE_072	9DFE	0.1489	1	Stack outside cWW (H)	1A	LSU rRNA	U	1898	G	1899	A	1901	*	U	1841	G	1842	cWW	cWW
17	IL_7MLW_005	7MLW	0.1925	0	Stack outside cWW	F	Guanidine-I riboswitch	U	43	G	44	C	45	*	G	17	G	18	cWW	cWW
18	IL_387D_001	387D	0.2241	1	Multiple bulged bases	A	RNA Pseudoknot	G	15	G	16	A	18	*	U	1	C	2	cWW	cWW
19	IL_5LYS_006	5LYS	0.1780	1	Stack outside cWW	B	7SK RNA	G	70	C	71	G	73	*	C	36	C	37	cWW	cWW
20	IL_4KZD_006	4KZD	0.2527	1	Stack outside cWW	R	RNA (84-MER)	G	49	U	50	G	52	*	C	30	C	31	cWW	cWW
21	IL_8K7W_004	8K7W	0.1625	1		A	RNA (49-MER)	G	30	U	31	G	33	*	C	14	C	15	cWW	cWW
22	IL_8K85_004	8K85	0.2340	1		B+A	RNA (56-MER)	G	36	U	37	G	39	*	C	15	C	16	cWW	cWW
23	IL_8K85_009	8K85	0.3205	1		A+B	RNA (56-MER)	G	36	U	37	G	39	*	C	15	C	16	cWW	cWW
24	IL_7L0Z_004	7L0Z	0.2980	1	Stack outside cWW	G	RNA (69-MER)	G	41	U	42	G	44	*	C	23	C	24	cWW	cWW
25	IL_1U9S_008	1U9S	0.3205	0	Stack outside cWW	A	RIBONUCLEASE P	G	217	G	218	C	219	*	G	195	C	196	cWW	cWW
26	IL_1NTA_001	1NTA	0.4033	0	Stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	5	G	6	C	7	*	G	114	G	115	cWW	cWW
27	IL_7OAX_001	7OAX	0.3950	0	Stack outside cWW	A	Chili RNA Aptamer	U	8	G	9	G	10	*	C	44	G	45	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUUG*CC	4
UAC*GG	2
CGC*GG	2
UGC*GG	2
UGAA*UG	2
G(UFT)A(CFL)*G(CFL)	1
UGAU*AG	1
GGU*AC	1
GGUC*GC	1
AUUG*CU	1
GAUG*CC	1
AAUG*CU	1
AUCUG*CU	1
GGAC*GC	1
CUGG*CG	1
GGAA*UC	1
GCUG*CC	1
GUCG*CC	1
GGC*GC	1
UGG*CG	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	7
GA*	5
UU*	5
A*	2
AU*	2
(UFT)A*	1
GU*	1
UCU*	1
UG*	1
CU*	1
UC*	1

Release history

Release	3.95	3.96	3.97
Date	2025-03-26	2025-04-23	2025-05-21
Status	Updated, 1 parent	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_66635.5 Version IL_66635.5 of this group appears in releases 3.95 to 3.97 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_66635.5 Version IL_66635.5 of this group appears in releases 3.95 to 3.97

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Csv

Json