Motif IL_66654.1 Version IL_66654.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4M6D_013 | 4M6D | 0.1538 | 0 | H | aptamer | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW |
2 | IL_4M4O_004 | 4M4O | 0.0000 | 0 | B | RNA (59-MER) | G | 26 | A | 27 | G | 28 | * | C | 39 | A | 40 | C | 41 | cWW | cWW |
3 | IL_3U5F_012 | 3U5F | 0.9375 | 0 | 6 | 18S rRNA | U | 150 | G | 151 | U | 152 | * | A | 162 | G | 163 | A | 164 | cWW | cWW |
4 | IL_4JK0_003 | 4JK0 | 0.9471 | 0 | B | RNA (21-mer) | C | 511||||4_555 | U | 512||||4_555 | G | 513||||4_555 | * | C | 511 | U | 512 | G | 513 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAG*CAC | 2 |
UGU*AGA | 1 |
CUG*CUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*A | 2 |
G*G | 1 |
U*U | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | > 2 parents |
Parent motifs
Parent motif | Common motif instances | Only in IL_66654.1 | Only in the parent motif |
---|---|---|---|
IL_70173.1 Compare | IL_4M4O_004, IL_4M6D_013 | IL_3U5F_012, IL_4JK0_003 | IL_3U5F_093, IL_3U5H_085, IL_4A1B_081, IL_3BNL_002 |
IL_17066.1 Compare | IL_4JK0_003 | IL_3U5F_012, IL_4M4O_004, IL_4M6D_013 | |
IL_43877.1 Compare | IL_3U5F_012 | IL_4JK0_003, IL_4M4O_004, IL_4M6D_013 | IL_3U5F_006 |
Children motifs
Child motif | Common motif instances | Only in IL_66654.1 | Only in the child motif |
---|---|---|---|
IL_22658.1 Compare | IL_4M4O_004, IL_4M6D_013 | IL_3U5F_012, IL_4JK0_003 | IL_1LNG_001, IL_4BPP_063 |
IL_22953.1 Compare | IL_4JK0_003 | IL_3U5F_012, IL_4M4O_004, IL_4M6D_013 | |
IL_32987.1 Compare | IL_3U5F_012 | IL_4JK0_003, IL_4M4O_004, IL_4M6D_013 | IL_4CUV_084, IL_4CUX_036, IL_3U5F_006, IL_4CUX_067, IL_3U5H_085, IL_4A1B_081 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.15 | Avg 0.54 | Max 0.98
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