#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2break 3 4 51-52-32-4
1 IL_3RW6_0033RW60.90371Minor groove platformHconstitutive transport element(CTE)of Mason-Pfizer monkey virus RNAA20G21*U38A40U41cWWcWWtSH
2 IL_4NVV_0574NVV0.00000A23S Ribosomal RNAC1509C1510*G1495A1496G1497cWWcWWncWW
3 IL_4FAW_0054FAW0.87982AGroup II catalytic intron D1-D4-1G128G129*U234G236U238cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AG*UAAU1
GAG*CC1
GG*UUGAU1
Non-Watson-Crick part of the motif
SequenceCounts
*AA1
A*1
*UGA1

Release history

Release1.14
Date2014-04-27
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_67887.2Only in the parent motif
IL_67887.1
Compare
IL_3RW6_003, IL_4FAW_005IL_4NVV_057

Children motifs

Child motifCommon motif instancesOnly in IL_67887.2Only in the child motif
IL_79910.1
Compare
IL_4FAW_005IL_4NVV_057, IL_3RW6_003
IL_68668.1
Compare
IL_4NVV_057IL_4FAW_005, IL_3RW6_003IL_3U5H_107, IL_4CUV_111
IL_40041.1
Compare
IL_3RW6_003IL_4NVV_057, IL_4FAW_005IL_3U5F_073
Annotations
  • (2)
  • Minor groove platform (1)
  • Basepair signature
    cWW-tSH-cWW
    Heat map statistics
    Min 0.88 | Avg 0.60 | Max 0.93
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.3492 s