Motif IL_67887.2 Version IL_67887.2 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3RW6_003 | 3RW6 | 0.9037 | 1 | Minor groove platform | H | constitutive transport element(CTE)of Mason-Pfizer monkey virus RNA | A | 20 | G | 21 | * | U | 38 | A | 40 | U | 41 | cWW | cWW | tSH |
2 | IL_4NVV_057 | 4NVV | 0.0000 | 0 | A | 23S Ribosomal RNA | C | 1509 | C | 1510 | * | G | 1495 | A | 1496 | G | 1497 | cWW | cWW | ncWW | |
3 | IL_4FAW_005 | 4FAW | 0.8798 | 2 | A | Group II catalytic intron D1-D4-1 | G | 128 | G | 129 | * | U | 234 | G | 236 | U | 238 | cWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
AG*UAAU | 1 |
GAG*CC | 1 |
GG*UUGAU | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
*AA | 1 |
A* | 1 |
*UGA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_67887.2 | Only in the parent motif |
---|---|---|---|
IL_67887.1 Compare | IL_3RW6_003, IL_4FAW_005 | IL_4NVV_057 |
Children motifs
Child motif | Common motif instances | Only in IL_67887.2 | Only in the child motif |
---|---|---|---|
IL_79910.1 Compare | IL_4FAW_005 | IL_4NVV_057, IL_3RW6_003 | |
IL_68668.1 Compare | IL_4NVV_057 | IL_4FAW_005, IL_3RW6_003 | IL_3U5H_107, IL_4CUV_111 |
IL_40041.1 Compare | IL_3RW6_003 | IL_4NVV_057, IL_4FAW_005 | IL_3U5F_073 |
- Annotations
-
- (2)
- Minor groove platform (1)
- Basepair signature
- cWW-tSH-cWW
- Heat map statistics
- Min 0.88 | Avg 0.60 | Max 0.93
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