Motif IL_67987.1 Version IL_67987.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5		6	1-4	1-6	2-3	2-4	2-5	3-5	4-5	4-6
1	IL_3Q1Q_005	3Q1Q	0.5642	0		B	RNase P RNA	C	126	G	127	*	C	148	A	149	A	150	G	151		cWW	cWW	ncWW		ncSH		ncSH
2	IL_1U9S_004	1U9S	0.6048	0	Major groove minor groove platform; mini C-loop	A	RIBONUCLEASE P	C	133	G	134	*	C	164	A	165	A	166	G	167	ncBW	cWW	cWW					cSH
3	IL_4V8P_321	4V8P	0.4094	0		F1	LSU rRNA	U	469	C	470	*	G	507	A	508	A	509	A	510	ntHS	cWW	ncWW		cSW
4	IL_4IOA_068	4IOA	0.3234	0	Major groove minor groove platform; mini C-loop (H)	X	LSU rRNA	C	1876	C	1877	*	G	1838	A	1839	A	1840	G	1841		ncWW	cWW		ntSH			ncSH
5	IL_4V8P_443	4V8P	0.3212	0	Major groove minor groove platform; mini C-loop (H)	G3	5S rRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW
6	IL_3J7Q_151	3J7Q	0.2864	0	Major groove minor groove platform; mini C-loop (H)	7	5S rRNA	C	28	C	29	*	G	48	A	49	A	50	G	51	ncBW	cWW	cWW				ncSH	ncSH
7	IL_4U26_172	4U26	0.2924	0	Major groove minor groove platform; mini C-loop (H)	BB	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	ncBW	cWW	cWW		cSW			ncSH
8	IL_1S72_101	1S72	0.2425	0	Major groove minor groove platform; mini C-loop (H)	9	5S rRNA	C	29	C	30	*	G	50	A	51	A	52	G	53		cWW	cWW		cSW		cSH
9	IL_3J92_173	3J92	0.2465	0	Major groove minor groove platform; mini C-loop (H)	7	5S rRNA	C	28	C	29	*	G	48	A	49	A	50	G	51		cWW	cWW		ncSW		cSH
10	IL_3J9W_181	3J9W	0.2337	0	Major groove minor groove platform; mini C-loop (H)	BB	5S rRNA	C	28	C	29	*	G	49	A	50	A	51	G	52	cBW	cWW	cWW		ncSW		ncSH
11	IL_4V8C_114	4V8C	0.2344	0	Major groove minor groove platform; mini C-loop (H)	AB	5S rRNA	C	30	C	31	*	G	51	A	52	A	53	G	54	cBW	cWW	cWW		cSW		cSH
12	IL_3J9W_140	3J9W	0.2750	0	Major groove minor groove platform; mini C-loop (H)	BA	LSU rRNA	C	1922	C	1923	*	G	1875	A	1876	A	1877	G	1878		cWW	cWW		ncSW
13	IL_5J7L_316	5J7L	0.2446	0	Major groove minor groove platform; mini C-loop	DA	LSU rRNA	C	1893	C	1894	*	G	1846	A	1847	A	1848	G	1849	ncBW	cWW	cWW		ncSW		ncSH
14	IL_3J9W_023	3J9W	0.1355	0	Major groove minor groove platform; mini C-loop (H)	AA	SSU rRNA	G	606	U	607	*	A	649	A	650	A	651	C	652		cWW	cWW		ncSW		ncSH	ncSH
15	IL_1FJG_025	1FJG	0.0988	0	Major groove minor groove platform; mini C-loop (H)	A	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW				cSH	ncSH
16	IL_4PDB_002	4PDB	0.0763	0	Major groove minor groove platform; mini C-loop	I	SELEX RNA aptamer	A	14	U	15	*	A	24	U	25	A	26	U	27		cWW	cWW		ncSW		ncSH
17	IL_1S03_007	1S03	0.0282	0	Major groove minor groove platform; mini C-loop	B	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
18	IL_1S03_003	1S03	0.0000	0	Major groove minor groove platform; mini C-loop	A	47-MER	G	37	U	38	*	A	12	A	13	A	14	C	15	ntHW	cWW	cWW		ncSW		cSH	ncSH
19	IL_1I6U_002	1I6U	0.0908	0	Major groove minor groove platform; mini C-loop	C	16S RRNA FRAGMENT	G	12	U	13	*	A	24	U	25	A	26	C	27		cWW	cWW		ncSW		cSH	ncSH
20	IL_4V4Q_209	4V4Q	0.1213	0	Major groove minor groove platform; mini C-loop (H)	CA	SSU rRNA	G	597	U	598	*	A	640	U	641	A	642	C	643		cWW	cWW		ncSW		cSH
21	IL_4V88_423	4V88	0.1607	0	Major groove minor groove platform; mini C-loop	A6	SSU rRNA	A	746	C	747	*	G	802	A	803	A	804	U	805		cWW	cWW				cSH
22	IL_5A2Q_039	5A2Q	0.1799	0	Major groove minor groove platform; mini C-loop (H)	2	SSU rRNA	A	802	C	803	*	G	860	A	861	A	862	U	863		cWW	cWW
23	IL_3JAM_038	3JAM	0.2040	0	Major groove minor groove platform; mini C-loop (H)	2	SSU rRNA	A	746	C	747	*	G	801	A	802	A	803	U	804		cWW	cWW				ncSH
24	IL_3J7P_190	3J7P	0.2324	0	Major groove minor groove platform; mini C-loop (H)	S2	SSU rRNA	A	802	C	803	*	G	860	A	861	A	862	U	863		cWW	cWW
25	IL_1U9S_005	1U9S	0.5210	0	Minor groove platform, major groove intercalation	A	RIBONUCLEASE P	G	161	G	162	*	C	136	A	137	G	138	C	139		cWW	cWW		ntSH
26	IL_5AN9_017	5AN9	0.5154	0	Major groove intercalation (H)	N	LSU rRNA	C	2511	G	2512	*	C	2462	C	2463	A	2464	G	2465		cWW	cWW
27	IL_4V88_332	4V88	0.5574	0	Major groove intercalation (H)	A5	LSU rRNA	C	2245	G	2246	*	C	2196	C	2197	A	2198	G	2199		cWW	cWW
28	IL_1U9S_002	1U9S	0.5649	1	Major groove intercalation	A	RIBONUCLEASE P	C	228	C	229	*	G	111	A	112	A	114	G	115		cWW	cWW
29	IL_4V9F_068	4V9F	0.4380	0	Major groove minor groove platform; mini C-loop	0	LSU rRNA	A	1934	C	1935	*	G	1902	U	1903	A	1904	U	1905		cWW	cWW
30	IL_3TZR_001	3TZR	0.6248	3	Major groove intercalation	B+A	RNA (16-mer)	G	110	C	111	*	G	52	A	53	A	57	C	58		cWW	cWW		ncSW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAAG	10
AC*GAAU	4
GU*AAAC	3
GU*AUAC	3
CG*CAAG	2
CG*CCAG	2
UC*GAAA	1
AU*AUAU	1
GG*CAGC	1
CC*GAAAG	1
AC*GUAU	1
GC*GAACUAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*AA	20
*UA	5
*CA	2
*AG	1
*AAA	1
*AACUA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Major groove minor groove platform; mini C-loop (H) (15)
Major groove minor groove platform; mini C-loop (8)
Major groove intercalation (2)
(2)
Major groove intercalation (H) (2)
Minor groove platform, major groove intercalation (1)
Basepair signature: cWW-cSW-cWW
Heat map statistics: Min 0.03 | Avg 0.38 | Max 0.91

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Coloring options: Nucleotide numbers

Motif IL_67987.1 Version IL_67987.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_67987.1 Version IL_67987.1 of this group appears in releases 2.0 to 2.0

Download

Csv

Json