Motif IL_68139.1 Version IL_68139.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR7_001 | 4KR7 | 0.2840 | 7 | M | RNA (39-MER) | U | 8 | U | 16 | * | A | 27 | G | 28 | cWW | cWW | |
| 2 | IL_2OZB_001 | 2OZB | 0.0000 | 1 | Single bulged A | C | RNA comprising the 5' Stem-Loop RNA of U4snRNA | U | 24 | G | 26 | * | C | 47 | G | 48 | cWW | cWW |
| 3 | IL_3U5H_046 | 3U5H | 0.3573 | 2 | 5 | LSU rRNA | U | 1015 | G | 1018 | * | U | 1034 | G | 1035 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUGUCCU*AG | 1 |
| UAG*CG | 1 |
| UCCG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUGUCC* | 1 |
| A* | 1 |
| CC* | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_68139.1 | Only in the parent motif |
|---|---|---|---|
| IL_61513.1 Compare | IL_2OZB_001, IL_3U5H_046 | IL_4KR7_001 | IL_4IOA_067, IL_1VWW_013 |
| IL_92422.1 Compare | IL_4KR7_001 | IL_2OZB_001, IL_3U5H_046 | IL_4KR7_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Single bulged A (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.28 | Avg 0.27 | Max 0.57
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