Motif IL_68538.1 Version IL_68538.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1GID_008 | 1GID | 0.4182 | 1 | B | P4-P6 RNA RIBOZYME DOMAIN | G | 103 | A | 104 | A | 105 | U | 107 | * | A | 214 | G | 215 | C | 216 | C | 217 | cWW | cWW | cWW | cWW | |
| 2 | IL_5J7L_033 | 5J7L | 0.1288 | 1 | Tandem non-canonical cWW pairs | AA | SSU rRNA | U | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | A | 743 | cWW | cWW | cwW | cWW |
| 3 | IL_1G1X_003 | 1G1X | 0.0000 | 1 | Tandem non-canonical cWW pairs | D+E | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 4 | IL_1G1X_006 | 1G1X | 0.0530 | 1 | Tandem non-canonical cWW pairs | I+J | 16S RIBOSOMAL RNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 5 | IL_4LFB_029 | 4LFB | 0.0727 | 1 | Tandem non-canonical cWW pairs | A | SSU rRNA | G | 662 | A | 663 | G | 664 | G | 666 | * | U | 740 | G | 741 | G | 742 | U | 743 | cWW | cWW | cwW | cWW |
| 6 | IL_6CZR_141 | 6CZR | 0.1729 | 1 | Tandem non-canonical cWW pairs | 1a | SSU rRNA | G | 646 | A | 647 | G | 648 | G | 650 | * | U | 724 | G | 725 | G | 726 | U | 727 | cWW | ncWW | cwW | cWW |
| 7 | IL_1KUQ_003 | 1KUQ | 0.3017 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
| 8 | IL_2O3Y_002 | 2O3Y | 0.9441 | 1 | Decoding loop related | B+A | RNA (23-mer) | A | 38 | A | 39 | A | 40 | G | 42 | * | C | 7 | G | 8 | C | 9 | U | 10 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAGAG*UGGU | 5 |
| GAAUU*AGCC | 1 |
| UAGAG*UGGA | 1 |
| AAAAG*CGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGA*GG | 6 |
| AAU*GC | 1 |
| AAA*GC | 1 |
- Annotations
-
- Tandem non-canonical cWW pairs (6)
- (1)
- Decoding loop related (1)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.38 | Max 0.95
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