Motif IL_68658.1 Version IL_68658.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-7	1-8	2-6	2-7	3-6	4-5	7-8
1	IL_5J7L_296	5J7L	0.6406	1	Tandem non-canonical cWW pairs	DA	LSU rRNA	G	1432	A	1433	A	1434	G	1435	*	C	1557	C	1558	G	1560	C	1561		cWW		cWW	tWW	cWW
2	IL_3J7P_220	3J7P	0.6854	1		S2	SSU rRNA	G	1428	G	1429	C	1430	G	1431	*	C	1415	C	1416	C	1417	C	1419		cWW				cWW
3	IL_5AJ0_019	5AJ0	0.6145	1		A2	LSU rRNA	G	437	G	438	U	439	C	440	*	G	1283	C	1284	U	1285	C	1287		cWW		ncWB		cWW
4	IL_4FWT_001	4FWT	0.4960	0		G+T	RNA (8-mer)	C	2003	U	2004	A	2005	C	2006	*	G	2103	U	2104	A	2105	G	2106		cWW		ncWW		cWW
5	IL_1FJG_029	1FJG	0.5803	1	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	U	740	G	741	G	742	U	743	*	G	662	A	663	G	664	G	666		cWW		cWw	cWW	cWW
6	IL_1G1X_006	1G1X	0.5692	1	Tandem non-canonical cWW pairs	J+I	16S RIBOSOMAL RNA	U	740	G	741	G	742	U	743	*	G	662	A	663	G	664	G	666		cWW		cWw	cWW	cWW
7	IL_1G1X_003	1G1X	0.5534	1	Tandem non-canonical cWW pairs	E+D	16S RIBOSOMAL RNA	U	740	G	741	G	742	U	743	*	G	662	A	663	G	664	G	666		cWW		cWw	cWW	cWW
8	IL_3J9W_028	3J9W	0.5167	1	Tandem non-canonical cWW pairs (H)	AA	SSU rRNA	U	749	G	750	G	751	U	752	*	A	671	A	672	G	673	G	675		cWW		cWw	cWW	cWW
9	IL_3J7P_079	3J7P	0.4577	1		5	LSU rRNA	C	2325	G	2326	G	2327	G	2328	*	C	2310	C	2311	U	2312	G	2314					ncWW	cWW	ncWH
10	IL_5A2Q_082	5A2Q	0.4400	1		2	SSU rRNA	C	1708	G	1709	C	1710	U	1711	*	A	1822	A	1823	A	1824	G	1826		cWW			ncWWa	cWW
11	IL_4ZC7_006	4ZC7	0.3984	0		C+D	RNA duplex	C	7	G	8	U	9	U	10	*	A	38	A	39	A	40	G	42		cWW	ncWW	ncWW	ncWW	cWW
12	IL_4V91_049	4V91	0.5039	0		1	LSU rRNA	U	1071	G	1072	U	1073	U	1074	*	A	1084	A	1085	C	1086	G	1087		cWW		ncWW	cWW	cWW
13	IL_5A2Q_077	5A2Q	0.6370	0		2	SSU rRNA	U	1560	A	1561	C	1562	G	1563	*	C	1572	G	1573	C	1574	G	1575		cWW		ncWW	cWW	cWW
14	IL_3JAM_039	3JAM	0.4233	0		2	SSU rRNA	C	797	A	798	U	799	G	800	*	U	748	U	749	U	750	G	751		cWW	ncWW	ncWW	ncwW	cWW
15	IL_3J7P_191	3J7P	0.2855	0		S2	SSU rRNA	C	856	U	857	A	858	G	859	*	U	804	U	805	U	806	G	807		cWW		ncwW		ncWW
16	IL_3J7P_127	3J7P	0.3612	1		5	LSU rRNA	A	4535	C	4536	C	4537	G	4538	*	C	4547	G	4549	G	4550	U	4551	ncWW
17	IL_3J7P_209	3J7P	0.4925	0		S2	SSU rRNA	C	1230	C	1231	U	1232	G	1233	*	C	1525	G	1526	C	1527	G	1528		cWW		ncWB		ncWW
18	IL_3J7A_064	3J7A	0.4590	0		A	SSU rRNA	C	1605	U	1606	U	1607	G	1608	*	C	1455	G	1456	A	1457	G	1458		ncWW		ncWW	ncWW	ncWW
19	IL_5A2Q_095	5A2Q	0.3597	0		3	IRES	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105		cWW		cWW	cwW	cWW
20	IL_4K27_002	4K27	0.3643	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	8	C	9	U	10	G	11	*	C	45	C	46	U	47	G	48		cWW		cWW	cWW	cWW
21	IL_4K27_003	4K27	0.3425	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	12	C	13	U	14	G	15	*	C	41	C	42	U	43	G	44		cWW		cWW	cWW	cWW
22	IL_5A2Q_029	5A2Q	0.3524	1		2	SSU rRNA	A	545	G	546	C	548	C	549	*	G	535	A	536	C	537	U	538		cWW		cWW	ncWW	cWW
23	IL_4K27_001	4K27	0.3370	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	4	C	5	U	6	G	7	*	C	49	C	50	U	51	G	52		cWW		cWW	cWW	cWW
24	IL_5EW4_002	5EW4	0.3202	0	Tandem non-canonical cWW pairs	B+A	RNA (22-mer)	C	8	C	9	C	10	G	11	*	C	14	C	15	C	16	G	17		cWW		ncBW	ncBW	cWW
25	IL_4GMA_008	4GMA	0.4460	0	Tandem non-canonical cWW pairs	Z	Adenosylcobalamin riboswitch	U	205	G	206	A	207	A	208	*	U	186	U	187	C	188	G	189		ncWW				cWW
26	IL_4BTS_305	4BTS	0.3821	1	Tandem non-canonical cWW pairs (H)	DA	SSU rRNA	U	852	G	853	G	855	G	856	*	C	928	A	929	A	930	A	931		cWW		cWW	cWW	cWW
27	IL_3JAM_044	3JAM	0.3626	1	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	C	873	G	874	G	876	G	877	*	C	949	A	950	A	951	G	952		cWW		cWW	cWW	cWW
28	IL_4V88_431	4V88	0.3979	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	874	G	875	G	877	G	878	*	C	950	A	951	A	952	G	953		cWW		cWW	cWW	cWW
29	IL_3J7P_198	3J7P	0.3758	1		S2	SSU rRNA	C	931	G	932	G	934	G	935	*	C	1007	A	1008	A	1009	G	1010		cWW		cWW	cWW	cWW
30	IL_5A2Q_047	5A2Q	0.3466	1		2	SSU rRNA	C	931	G	932	G	934	G	935	*	C	1007	A	1008	A	1009	G	1010		cWW		cWW	cWW	cWW
31	IL_3J7P_116	3J7P	0.3894	0	Tandem non-canonical cWW pairs (H)	5	LSU rRNA	U	4295	U	4296	G	4297	A	4298	*	U	4312	A	4313	C	4314	A	4315		ncWW			cWW	cWW
32	IL_5AJ0_144	5AJ0	0.3779	0	Tandem non-canonical cWW pairs (H)	A2	LSU rRNA	U	4257	U	4258	G	4259	A	4260	*	U	4274	A	4275	C	4276	A	4277		cWW		cWW	cWW	cWW
33	IL_4V8P_405	4V8P	0.3179	0	Tandem non-canonical cWW pairs (H)	F1	LSU rRNA	U	2724	A	2725	C	2726	A	2727	*	U	2707	U	2708	G	2709	A	2710		cWW		cWW	cWW	cWW
34	IL_3J9W_058	3J9W	0.3281	0		AA	SSU rRNA	U	1433	A	1434	A	1435	C	1436	*	G	1483	G	1484	G	1485	A	1486		cWW		cWW	cWW	cWW
35	IL_5J7L_283	5J7L	0.3183	0	Tandem non-canonical cWW pairs	DA	LSU rRNA	C	1114	G	1115	G	1116	C	1117	*	G	1038	A	1039	A	1040	G	1041		cWW		cWW	cWW	cWW
36	IL_5G2X_015	5G2X	0.3193	0		A	Group II catalytic intron	C	2407	U	2408	C	2409	C	2410	*	G	2415	G	2416	G	2417	G	2418		cWW			ncWW	ncWW
37	IL_4V88_347	4V88	0.3823	0	Tandem non-canonical cWW pairs (H)	A5	LSU rRNA	U	2718	U	2719	G	2720	A	2721	*	U	2735	A	2736	C	2737	A	2738		cWW			cWW	cWW
38	IL_4V91_109	4V91	0.4078	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	U	2718	U	2719	G	2720	A	2721	*	U	2735	A	2736	C	2737	A	2738		cWW			cWW	cWW
39	IL_4BTS_303	4BTS	0.3633	1	Tandem non-canonical cWW pairs (H)	DA	SSU rRNA	G	935	U	936	U	938	U	939	*	G	845	G	846	A	847	C	848		cWW		ncWW	ncWW	cWW
40	IL_5A2Q_045	5A2Q	0.3881	1	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	G	1014	U	1015	U	1017	U	1018	*	G	924	G	925	A	926	C	927		cWW		ncWW	ncWW	cWW
41	IL_4V88_429	4V88	0.3619	1	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	957	U	958	U	960	U	961	*	G	867	G	868	A	869	C	870		cWW			ncWW	cWW
42	IL_4V91_013	4V91	0.3440	0		1	LSU rRNA	G	241	C	242	G	243	G	244	*	C	174	C	175	G	176	U	177		cWW		ncWW	cWW	cWW
43	IL_4UYK_003	4UYK	0.2926	0	Tandem non-canonical cWW pairs	R	SRP RNA	G	117	U	118	U	119	C	120	*	G	81	U	82	U	83	C	84		cWW		cwW	cWw	cWW
44	IL_4IOA_041	4IOA	0.2832	0	Tandem non-canonical cWW pairs	X	LSU rRNA	G	1196	U	1197	C	1198	U	1199	*	A	1175	U	1176	U	1177	C	1178		cWW		cwW	cWW	cWW
45	IL_3TZR_003	3TZR	0.2752	0	Tandem non-canonical cWW pairs	B+A	RNA (16-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65		cWW		cwW	cWW	cWW
46	IL_2PN4_009	2PN4	0.2496	0		D+C	RNA (20-mer)	G	102	U	103	C	104	G	105	*	C	62	U	63	U	64	C	65		cWW		cwW	cWW	cWW
47	IL_3J9M_104	3J9M	0.1603	0		AA	SSU rRNA	A	1540	U	1541	U	1542	U	1543	*	A	1507	C	1508	U	1509	U	1510		cWW	ncWW	cwW	cWW	cWW
48	IL_4BTS_348	4BTS	0.2261	0		DA	SSU rRNA	A	1676	A	1677	U	1678	A	1679	*	U	1646	U	1647	C	1648	U	1649		cWW		cWWa	cWw	cWW
49	IL_3JCS_091	3JCS	0.2461	0		2	LSU rRNA	C	753	U	754	U	755	C	756	*	G	683	C	684	G	685	G	686		cWW		ncWW	cWW	cWW
50	IL_4V19_004	4V19	0.2248	0		A	LSU rRNA	U	92	U	93	U	94	U	95	*	A	70	U	71	U	72	A	73		cWW		cwW	ncWw	cWW
51	IL_4BTS_345	4BTS	0.1738	0		DA	SSU rRNA	U	1635	C	1636	U	1637	G	1638	*	C	1687	C	1688	U	1689	A	1690		cWW		ncWW	cWW	cWW
52	IL_4V91_140	4V91	0.0000	0		1	LSU rRNA	U	3300	U	3301	U	3302	G	3303	*	C	3311	U	3312	U	3313	A	3314		cWW		cwW	ncWw	cWW
53	IL_4V88_376	4V88	0.1332	0		A5	LSU rRNA	U	3300	U	3301	U	3302	G	3303	*	C	3311	U	3312	U	3313	A	3314		cWW		cwW	cWw	cWW
54	IL_3J79_017	3J79	0.1915	0		A	LSU rRNA	U	633	U	634	U	635	U	636	*	A	519	U	520	U	521	A	522		cWW		cwW	cWw	cWW
55	IL_4V91_139	4V91	0.2567	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	C	3249	U	3250	U	3251	G	3252	*	C	3235	U	3236	U	3237	G	3238		ncWW		cwW	ncWw	cWW
56	IL_4V88_473	4V88	0.2998	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	U	1723	U	1724	U	1725	G	1726	*	C	1675	U	1676	C	1677	A	1678		cWW			cWw	cWW
57	IL_3JAM_084	3JAM	0.2646	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	U	1721	C	1722	U	1723	G	1724	*	C	1673	U	1674	C	1675	A	1676		cWW		ncWw	cWw	cWW
58	IL_4EYA_012	4EYA	0.2581	0		r+q	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW		cwW	cWw	cWW
59	IL_5C5W_003	5C5W	0.2437	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	15	U	16	A	17	G	18	*	C	2\|\|\|\|5_556	C	3\|\|\|\|5_556	U	4\|\|\|\|5_556	G	5\|\|\|\|5_556		cWW		cwW	cWW	cWW
60	IL_5C5W_001	5C5W	0.2437	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	15\|\|\|\|5_556	U	16\|\|\|\|5_556	A	17\|\|\|\|5_556	G	18\|\|\|\|5_556	*	C	2	C	3	U	4	G	5		cWW		cwW	cWW	cWW
61	IL_3R2D_002	3R2D	0.2185	0	Tandem non-canonical cWW pairs	S+R	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW		cwW	cWw	cWW
62	IL_4V88_375	4V88	0.2508	0	Tandem non-canonical cWW pairs (H)	A5	LSU rRNA	C	3235	U	3236	U	3237	G	3238	*	C	3249	U	3250	U	3251	G	3252		cWW		cwW	cWw	cWW
63	IL_280D_002	280D	0.2461	0		C+D	RNA (12-mer)	C	29	U	30	U	31	G	32	*	C	41	U	42	U	43	G	44		cWW		cwW	cWw	cWW
64	IL_3J79_008	3J79	0.2540	0		A	LSU rRNA	U	263	U	264	U	265	U	266	*	A	165	U	166	U	167	A	168		cWW		cwW	cWw	cWW
65	IL_5AJ3_014	5AJ3	0.2830	6		A	SSU rRNA	U	230	U	237	C	238	U	239	*	A	264	U	265	U	266	A	267		cWW		cwW	cWW	cWW
66	IL_5EW4_001	5EW4	0.3314	0	Tandem non-canonical cWW pairs	B+A	RNA (22-mer)	C	14	C	15	C	16	G	17	*	C	8	C	9	C	10	G	11		cWW		cWw	cBW	cWW
67	IL_4V91_124	4V91	0.2781	0		1	LSU rRNA	C	3039	A	3040	U	3041	U	3042	*	A	3012	U	3013	U	3014	G	3015		cWW		cWW	cWw	cWW
68	IL_3JAM_008	3JAM	0.2214	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	U	301	U	302	U	303	C	304	*	G	109	U	110	U	111	A	112		cWW		cwW	cWw	cWW
69	IL_3J7A_008	3J7A	0.2156	0	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	U	308	U	309	U	310	C	311	*	G	111	U	112	U	113	A	114		cWW		cwW	cWw	cWW
70	IL_4V88_391	4V88	0.2872	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	U	302	U	303	U	304	C	305	*	G	109	U	110	U	111	A	112		cWW		cwW	cWw	cWW
71	IL_4BTS_270	4BTS	0.2931	0	Tandem non-canonical cWW pairs (H)	DA	SSU rRNA	U	293	U	294	U	295	C	296	*	G	105	U	106	U	107	A	108		cWW		cwW	cWw	cWW
72	IL_5AJ0_175	5AJ0	0.2627	0		A2	LSU rRNA	U	4930	U	4931	C	4932	G	4933	*	C	4941	C	4942	U	4943	G	4944		cWW		cwW	cWw	cWW
73	IL_4V8P_429	4V8P	0.2270	0	Tandem non-canonical cWW pairs (H)	F1	LSU rRNA	U	3260	U	3261	U	3262	G	3263	*	C	3271	U	3272	U	3273	A	3274		cWW		cwW	cwW	cWW
74	IL_361D_001	361D	0.3184	0	Tandem non-canonical cWW pairs	B	RNA (20-mer)	C	93	C	94	U	95	G	96	*	U	80	G	81	G	82	G	83		cWW			ncWWa	cWW
75	IL_4EYA_008	4EYA	0.3444	0	Tandem non-canonical cWW pairs	k+l	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		cWW		ncWw	ncWw	cWW
76	IL_4EYA_010	4EYA	0.4587	0	Tandem non-canonical cWW pairs	n+m	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9		ncWW		ncWw	ncWw	cWW
77	IL_3WBM_002	3WBM	0.4272	0	Tandem non-canonical cWW pairs	X+Y	RNA (25-MER)	A	10	C	11	C	12	C	13	*	G	14	A	15	C	16	U	17		cWW		ncWB	ncWW	cWW
78	IL_3JAM_049	3JAM	0.4918	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	G	1040	G	1041	A	1042	U	1043	*	G	1073	C	1074	A	1075	C	1076		cWW		cWW	ncWB	cWW
79	IL_4BTS_311	4BTS	0.4734	0	Tandem non-canonical cWW pairs (H)	DA	SSU rRNA	G	1019	G	1020	A	1021	U	1022	*	G	1046	C	1047	A	1048	C	1049		cWW		cWW	ncWB	ncWW
80	IL_4V88_438	4V88	0.4945	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	1041	G	1042	A	1043	U	1044	*	G	1074	C	1075	A	1076	C	1077		cWW		cWW	ncWB	cWW
81	IL_5A2Q_053	5A2Q	0.4389	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	C	1098	G	1099	A	1100	U	1101	*	G	1131	C	1132	A	1133	G	1134		cWW		cWW	ncWWa	cWW
82	IL_5AJ0_078	5AJ0	0.3733	0		A2	LSU rRNA	G	1742	G	1743	C	1744	C	1745	*	G	1751	A	1752	U	1753	C	1754		cWW	ncWW		ncWWa	cWW
83	IL_1JID_002	1JID	0.4355	0	Tandem non-canonical cWW pairs	B	HELIX 6 OF HUMAN SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141		cWW		cWW	cWW	cWW
84	IL_1D4R_006	1D4R	0.3634	0		C	29-MER OF MODIFIED SRP RNA HELIX 6	G	22	A	23	C	24	C	25	*	G	4\|\|\|\|6_555	A	5\|\|\|\|6_555	C	6\|\|\|\|6_555	C	7\|\|\|\|6_555		cWW		ncWWa	cWW	cWW
85	IL_1D4R_004	1D4R	0.3634	0		C	29-MER OF MODIFIED SRP RNA HELIX 6	G	22\|\|\|\|6_555	A	23\|\|\|\|6_555	C	24\|\|\|\|6_555	C	25\|\|\|\|6_555	*	G	4	A	5	C	6	C	7		cWW		ncWWa	cWW	cWW
86	IL_3JAN_005	3JAN	0.3571	0	Tandem non-canonical cWW pairs (H)	4	SRP RNA	G	156	A	157	C	158	C	159	*	G	138	A	139	C	140	C	141		cWW		ncWWa	cWW	cWW
87	IL_5AJ3_040	5AJ3	0.2687	0	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	G	910	A	911	A	912	G	913	*	C	857	C	858	U	859	C	860		cWW		cWW	ncWWa	cWW
88	IL_3J7A_037	3J7A	0.3567	0		A	SSU rRNA	A	883	G	884	C	885	U	886	*	G	916	C	917	U	918	U	919		cWW				cWW
89	IL_3J79_122	3J79	0.2850	0		A	LSU rRNA	C	3705	U	3706	U	3707	U	3708	*	A	3694	C	3695	U	3696	G	3697		cWW		ncWw	cWW	cWW
90	IL_3WBM_003	3WBM	0.3703	0	Tandem non-canonical cWW pairs	X+Y	RNA (25-MER)	G	14	A	15	C	16	U	17	*	A	10	C	11	C	12	C	13		cWW		cWW	ncBW	cWW
91	IL_5AJ0_011	5AJ0	0.3540	0		A2	LSU rRNA	G	161	A	162	C	163	C	164	*	G	263	U	264	C	265	U	266		cWW		cWW		cWW
92	IL_4P9R_002	4P9R	0.3743	0		A	RNA (189-MER)	A	15	G	16	A	17	C	18	*	G	223	G	224	G	225	U	226		cWW			cWW	cWW
93	IL_4P8Z_002	4P8Z	0.3662	0	Tandem non-canonical cWW pairs	A	Lariat capping ribozyme	A	181	G	182	A	183	C	184	*	G	5	G	6	G	7	U	8		cWW			cWW	cWW
94	IL_4V88_432	4V88	0.4578	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	A	924	G	925	A	926	C	927	*	G	885	U	886	A	887	U	888		cWW		cWW		cWW
95	IL_5A2Q_048	5A2Q	0.4044	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	A	981	G	982	A	983	C	984	*	G	942	U	943	A	944	U	945		cWW		cWW		cWW
96	IL_3J7A_044	3J7A	0.4401	0	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	A	993	G	994	A	995	C	996	*	G	954	U	955	A	956	U	957		cWW		cWW		cWW
97	IL_3JAM_045	3JAM	0.4127	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	A	923	G	924	A	925	C	926	*	G	884	U	885	A	886	U	887		ncWW		cWW		cWW
98	IL_5A2Q_046	5A2Q	0.4985	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	G	1010	A	1011	A	1012	U	1013	*	G	928	G	929	C	930	C	931		cWW			cWW	cWW
99	IL_4V88_430	4V88	0.4690	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	G	953	G	954	A	955	C	956	*	G	871	G	872	U	873	C	874		cWW			cWW	cWW
100	IL_3JAM_043	3JAM	0.4822	0		2	SSU rRNA	G	952	G	953	A	954	C	955	*	G	870	G	871	U	872	C	873		cWW			cWW	cWW
101	IL_4BTS_304	4BTS	0.4457	0		DA	SSU rRNA	A	931	G	932	A	933	U	934	*	A	849	G	850	U	851	U	852		cWW		ncWW	cWW	cWW
102	IL_3J7P_183	3J7P	0.5407	7		S2	SSU rRNA	A	599	G	606	C	608	U	609	*	A	634	G	635	C	636	U	637		cWW				ncWW
103	IL_5A2Q_071	5A2Q	0.6015	1		2	SSU rRNA	C	1395	A	1396	G	1398	C	1399	*	G	1447	A	1448	G	1449	G	1450		cWW		ncHW	cWW	cWW
104	IL_3J7P_217	3J7P	0.4916	1		S2	SSU rRNA	C	1395	A	1396	G	1398	C	1399	*	G	1447	A	1448	G	1449	G	1450		ncWW			ncWW	cWW
105	IL_4WFA_110	4WFA	0.4800	0		Y	5S rRNA	U	107	G	108	C	109	C	110	*	G	5	U	6	G	7	A	8		cWW				cWW
106	IL_3J79_022	3J79	0.4539	0		A	LSU rRNA	C	672	U	673	U	674	A	675	*	U	658	U	659	U	660	G	661		cWW			cWw	cWW
107	IL_5AJ3_033	5AJ3	0.4541	0		A	SSU rRNA	C	629	A	630	A	631	A	632	*	U	652	A	653	A	654	G	655		cWW		ncwW	ntHS	cWW
108	IL_5A2Q_031	5A2Q	0.4791	0		2	SSU rRNA	U	566	C	567	C	568	A	569	*	U	581	U	582	A	583	A	584		cWW		ncSW		cWW
109	IL_402D_001	402D	0.3128	0	Tandem non-canonical cWW pairs	A+B	RNA (8-mer)	C	103	C	104	A	105	G	106	*	C	111	C	112	A	113	G	114		cWW		cWW	cWW	cWW
110	IL_4V88_284	4V88	0.3204	0		A5	LSU rRNA	A	1006	U	1007	U	1008	A	1009	*	U	1041	U	1042	C	1043	U	1044		cWW			cWw	cWW
111	IL_5AJ0_074	5AJ0	0.3285	0	Tandem non-canonical cWW pairs (H)	A2	LSU rRNA	A	1728	U	1729	U	1730	A	1731	*	U	1763	U	1764	C	1765	U	1766		cWW		ncSW	cWw	cWW
112	IL_3J7P_059	3J7P	0.2905	0		5	LSU rRNA	A	1746	U	1747	U	1748	A	1749	*	U	1781	U	1782	C	1783	U	1784		cWW			cWw	ncWW
113	IL_4V8P_349	4V8P	0.4414	0	Tandem non-canonical cWW pairs (H)	F1	LSU rRNA	U	1067	U	1068	C	1069	U	1070	*	A	1032	U	1033	U	1034	A	1035		ncWW		cwW	ncWS	cWW
114	IL_3JAM_073	3JAM	0.5118	0	Tandem non-canonical cWW pairs (H)	2	SSU rRNA	C	1493	U	1494	U	1495	G	1496	*	C	1507	U	1508	G	1509	G	1510		cWW				cWW
115	IL_4V88_461	4V88	0.4231	0	Tandem non-canonical cWW pairs	A6	SSU rRNA	C	1495	U	1496	U	1497	G	1498	*	C	1509	U	1510	U	1511	G	1512		cWW		cwW		cWW
116	IL_3J7A_067	3J7A	0.4900	0	Tandem non-canonical cWW pairs (H)	A	SSU rRNA	C	1791	U	1792	C	1793	C	1794	*	G	1805	U	1806	A	1807	G	1808		cWW				cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	8
CGGGG*CAAG	4
UUGA*UACA	4
UUUC*GUUA	4
GACC*GACC	4
AGAC*GUAU	4
UGGU*GAGAG	3
CCUG*CCUG	3
GUUUU*GGAC	3
UUUU*AUUA	3
UUUG*CUUA	3
GGAU*GCAC	3
AUUA*UUCU	3
CCCG*CCCG	2
GUCG*CUUC	2
CUAG*CCUG	2
AGAC*GGGU	2
GGAC*GGUC	2
CAUGC*GAGG	2
GAAG*CCUGC	1
GGCG*CCCCC	1
GGUC*GCUAC	1
CUAC*GUAG	1
UGGU*AAGAG	1
CGGG*CCUAG	1
CGCU*AAAAG	1
CGUU*AAAG	1
UGUU*AACG	1
UACG*CGCG	1
CAUG*UUUG	1
CUAG*UUUG	1
ACCG*CAGGU	1
CCUG*CGCG	1
CUUG*CGAG	1
CUUC*GUCG	1
AGGCC*GACU	1
UGAA*UUCG	1
UGGGG*CAAA	1
UACA*UUGA	1
UAAC*GGGA	1
CGGC*GAAG	1
CUCC*GGGG	1
GCGG*CCGU	1
GUUC*GUUC	1
GUCU*AUUC	1
AUUU*ACUU	1
AAUA*UUCU	1
CUUC*GCGG	1
UCUG*CCUA	1
UUUG*CUCA	1
UCUG*CUCA	1
UGGUAAAUCU*AUUA	1
CAUU*AUUG	1
UUCG*CCUG	1
CCUG*UGGG	1
ACCC*GACU	1
CGAU*GCAG	1
GGCC*GAUC	1
GAAG*CCUC	1
AGCU*GCUU	1
CUUU*ACUG	1
GACU*ACCC	1
GACC*GUCU	1
GAAU*GGCC	1
AGAU*AGUU	1
AGGGCAAGUCU*AGCU	1
UGCC*GUGA	1
CUUA*UUUG	1
CAAA*UAAG	1
UCCA*UUAA	1
CCAG*CCAG	1
UUCU*AUUA	1
CUUG*CUGG	1
CUCC*GUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	20
UU*UC	5
GGG*AA	5
GG*AGA	4
CU*CU	4
UG*AC	4
UC*UU	4
GA*CA	4
AC*AC	4
GA*UA	4
UUU*GA	3
GA*GU	3
AU*UU	2
CC*CC	2
UU*CU	2
UA*CU	2
GA*GG	2
AUG*AG	2
AA*CUG	1
GC*CCC	1
GU*CUA	1
UA*UA	1
GG*CUA	1
GC*AAA	1
GU*AA	1
GU*AC	1
AC*GC	1
UA*UU	1
CC*AGG	1
CU*GC	1
UU*GA	1
GGC*AC	1
GA*UC	1
AC*UG	1
AA*GG	1
GG*AA	1
UC*GG	1
CG*CG	1
AU*UC	1
UU*CG	1
CU*UC	1
GGUAAAUC*UU	1
UC*CU	1
CU*GG	1
CC*AC	1
GC*AU	1
AA*CU	1
GC*CU	1
AC*CC	1
AC*UC	1
AA*GC	1
GGGCAAGUC*GC	1
GC*UG	1
AA*AA	1
CC*UA	1
CA*CA	1
UU*UG	1
UC*UA	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (53)
Tandem non-canonical cWW pairs (32)
Tandem non-canonical cWW pairs (H) (31)
Basepair signature: cWW-cWW-cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.48 | Max 1.02

Help

Coloring options: Nucleotide numbers

Motif IL_68658.1 Version IL_68658.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_68658.1 Version IL_68658.1 of this group appears in releases 2.0 to 2.0

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Csv

Json