Motif IL_69145.3 Version IL_69145.3 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3V7E_005 | 3V7E | 0.2290 | 0 | C | SAM-I riboswitch | U | 96 | C | 97 | C | 98 | U | 99 | G | 100 | C | 101 | * | G | 114 | A | 115 | A | 116 | A | 117 | cWW | cWW | |
| 2 | IL_5FJC_004 | 5FJC | 0.0000 | 0 | Pseudoknot | A | SAM-I riboswitch | U | 64 | C | 65 | C | 66 | U | 67 | G | 68 | C | 69 | * | G | 82 | A | 83 | A | 84 | A | 85 | cWW | cWW |
| 3 | IL_4AOB_004 | 4AOB | 0.1278 | 0 | Pseudoknot | A | SAM-I riboswitch | U | 64 | C | 65 | C | 66 | U | 67 | G | 68 | C | 69 | * | G | 82 | A | 83 | A | 84 | A | 85 | cWW | cWW |
| 4 | IL_4KQY_006 | 4KQY | 0.2147 | 0 | Pseudoknot | A | SAM-I riboswitch | U | 85 | C | 86 | C | 87 | A | 88 | G | 89 | C | 90 | * | G | 106 | G | 107 | A | 108 | A | 109 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCCUGC*GAAA | 3 |
| UCCAGC*GGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUG*AA | 3 |
| CCAG*GA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot (3)
- (1)
- Basepair signature
- cWW-L-cWW-L-R-L-R-R
- Heat map statistics
- Min 0.13 | Avg 0.17 | Max 0.27
Coloring options: