Motif IL_69536.2 Version IL_69536.2 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-4 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_103 | 2QBG | 0.1639 | 2 | B | 23S rRNA | U | 2687 | G | 2688 | C | 2691 | * | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | cWW | tSH | cWW |
2 | IL_4NVV_101 | 4NVV | 0.0000 | 2 | A | 23S Ribosomal RNA | U | 2699 | U | 2700 | C | 2703 | * | G | 2731 | G | 2732 | U | 2733 | A | 2734 | G | 2735 | cWW | tSH | cWW |
3 | IL_4IOA_098 | 4IOA | 0.1564 | 2 | X | LSU rRNA | U | 2666 | C | 2667 | C | 2670 | * | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUUC*GGUAG | 1 |
UUUCC*GGUAG | 1 |
UCUCC*GGUAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUU*GUA | 1 |
UUC*GUA | 1 |
CUC*GUA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | Updated, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_69536.2 | Only in the parent motif |
---|---|---|---|
IL_69536.1 Compare | IL_4IOA_098, IL_2QBG_103 | IL_4NVV_101 |
Children motifs
Child motif | Common motif instances | Only in IL_69536.2 | Only in the child motif |
---|---|---|---|
IL_69536.3 Compare | IL_4NVV_101, IL_2QBG_103, IL_4IOA_098 | IL_4CUX_084 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-R-R-cWW
- Heat map statistics
- Min 0.16 | Avg 0.11 | Max 0.17
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