Motif IL_69543.1 Version IL_69543.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-7 | 4-9 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_058 | 4V9F | 0.0000 | 1 | Kink-turn | 0 | LSU rRNA | U | 1587 | G | 1588 | G | 1589 | A | 1590 | A | 1591 | G | 1592 | * | C | 1602 | A | 1603 | G | 1605 | A | 1606 | A | 1607 | G | 1608 | cWW | tSH | tSH | tSs | tHS | cWW |
| 2 | IL_8P9A_301 | 8P9A | 0.5719 | 2 | Kink-turn (H) | AR | LSU rRNA | C | 1711 | G | 1712 | G | 1713 | A | 1714 | A | 1715 | U | 1717 | * | G | 1727 | G | 1728 | G | 1730 | A | 1731 | U | 1732 | G | 1733 | cWW | tSH | tSs | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGGAAG*CAGGAAG | 1 |
| CGGAAUU*GGAGAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*AGGAA | 1 |
| GGAAU*GAGAU | 1 |
- Annotations
-
- Kink-turn (1)
- Kink-turn (H) (1)
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Heat map statistics
- Min 0.57 | Avg 0.29 | Max 0.57
Coloring options: