Motif IL_69632.1 Version IL_69632.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1MJI_003 | 1MJI | 0.4780 | 2 | Multiple bulged bases | D | 5S rRNA fragment | C | 30 | C | 31 | * | G | 51 | G | 54 | cWW | cWW |
| 2 | IL_4V9F_070 | 4V9F | 0.2189 | 2 | Bulged stacked bases | 0 | LSU rRNA | G | 1974 | C | 1975 | * | G | 2005 | U | 2008 | cWW | cWW |
| 3 | IL_5TBW_089 | 5TBW | 0.1647 | 2 | Bulged stacked bases | 1 | LSU rRNA | G | 2276 | C | 2277 | * | G | 2307 | U | 2310 | cWW | cWW |
| 4 | IL_5J7L_318 | 5J7L | 0.0000 | 2 | Bulged stacked bases | DA | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 5 | IL_7RQB_076 | 7RQB | 0.0595 | 2 | Bulged stacked bases | 1A | LSU rRNA | G | 1933 | C | 1934 | * | G | 1964 | C | 1967 | cWW | cWW |
| 6 | IL_4WF9_076 | 4WF9 | 0.1618 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1960 | C | 1961 | * | G | 1991 | C | 1994 | cWW | cWW |
| 7 | IL_7A0S_071 | 7A0S | 0.2036 | 2 | Bulged stacked bases | X | LSU rRNA | G | 1916 | C | 1917 | * | G | 1947 | C | 1950 | cWW | cWW |
| 8 | IL_397D_001 | 397D | 0.4515 | 3 | Multiple bulged bases | B+A | RNA (12-mer) | C | 39 | U | 40 | * | A | 22 | G | 26 | cWW | cWW |
| 9 | IL_4WF9_096 | 4WF9 | 0.7029 | 2 | X | LSU rRNA | C | 2539 | A | 2540 | * | U | 2598 | G | 2601 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GCAC | 4 |
| GC*GCAU | 2 |
| CC*GAAG | 1 |
| CU*AUCUG | 1 |
| CA*UACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *CA | 6 |
| *AA | 1 |
| *UCU | 1 |
| *AC | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Bulged stacked bases (6)
- Multiple bulged bases (2)
- (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.37 | Max 0.96
Coloring options: