Motif IL_70237.1 Version IL_70237.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-3 | 1-10 | 4-10 | 5-6 | 6-9 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_004 | 2QBG | 0.9064 | 0 | A | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW | |
| 2 | IL_1MJI_004 | 1MJI | 0.4202 | 0 | Symmetric double minor groove platform | D | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 3 | IL_1MJI_002 | 1MJI | 0.0000 | 0 | C | 5S rRNA fragment | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | A | 45 | A | 46 | C | 47 | U | 48 | ntSW | cWW | cWS | cWW | tSW | |
| 4 | IL_1S72_102 | 1S72 | 0.1950 | 0 | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | A | 44 | A | 45 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACCCC*GAACU | 3 |
| UACCC*GAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCC*AAC | 3 |
| ACC*AAC | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_70237.1 | Only in the parent motif |
|---|---|---|---|
| IL_19801.1 Compare | IL_1S72_102, IL_1MJI_002 | IL_1MJI_004, IL_2QBG_004 | IL_3F1H_111 |
| IL_90454.1 Compare | IL_1MJI_004 | IL_1S72_102, IL_2QBG_004, IL_1MJI_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_70237.1 | Only in the child motif |
|---|---|---|---|
| IL_70237.2 Compare | IL_1S72_102, IL_1MJI_004, IL_2QBG_004, IL_1MJI_002 | IL_4A1C_007, IL_3UXR_110 |
- Annotations
-
- (3)
- Symmetric double minor groove platform (1)
- Basepair signature
- Heat map statistics
- Min 0.20 | Avg 0.46 | Max 0.94
Coloring options: