#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-31-104-105-66-9
1 IL_4CUV_1544CUV0.2076035S RRNAU32U33C34C35C36*G41A42U43C44A45ncSHcWWcWScWWntSW
2 IL_3U5H_1473U5H0.2023075S rRNAU32U33C34C35C36*G41A42U43C44A45ncSHcWWcWScWWtSW
3 IL_1S72_1021S720.093509 5S rRNAU33A34C35C36C37*G43A44A45C46A47cSHcWWcWScWWtSW
4 IL_4NVV_1104NVV0.00000B5S Ribosomal RNAU34U35C36C37C38*G44A45A46C47A48cSHcWWcWScWWtSW
5 IL_1MJI_0021MJI0.17290C5S rRNA fragmentA34C35C36C37C38*G44A45A46C47U48ntSWcWWcWScWWtSW
6 IL_4A1C_0074A1C0.1826035S RRNAA32U33C34C35C36*G41A42A43C44U45cWWcWWtSW
7 IL_2QBG_0042QBG0.42250A5S rRNAA34C35C36C37C38*G44A45A46C47U48ncSHcWWcWScWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
UUCCC*GAUCA2
ACCCC*GAACU2
UACCC*GAACA1
UUCCC*GAACA1
AUCCC*GAACU1
Non-Watson-Crick part of the motif
SequenceCounts
UCC*AUC2
UCC*AAC2
CCC*AAC2
ACC*AAC1

Release history

Release1.15
Date2014-06-20
StatusUpdated, 1 parent

Parent motifs

Parent motifCommon motif instancesOnly in IL_70237.5Only in the parent motif
IL_70237.4
Compare
IL_1S72_102, IL_4A1C_007, IL_4NVV_110, IL_1MJI_002, IL_2QBG_004, IL_3U5H_147IL_4CUV_154

Children motifs

Child motifCommon motif instancesOnly in IL_70237.5Only in the child motif
IL_70237.6
Compare
IL_1S72_102, IL_4A1C_007, IL_4CUV_154, IL_1MJI_002, IL_2QBG_004, IL_3U5H_147IL_4NVV_110IL_4QCN_111, IL_1VX6_143, IL_1VWW_162
Annotations
  • (7)
  • Basepair signature
    cWW-L-L-cWS-tSW-R-R-cWW
    Heat map statistics
    Min 0.09 | Avg 0.23 | Max 0.49
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