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Motif IL_70707.3 Version IL_70707.3 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4WT8_2324WT80.40350C3 tRNAG63A64G65*C49U50U51ncWWcWW
2 IL_3ICQ_0033ICQ0.21840ERNA (62-MER)G3G4A5*U68U69C70cWWncWWcWW
3 IL_1Y27_0011Y270.22160Isolated non-canonical cWW pairXPurine riboswitchC43A44A45*U25C26G27cWWcWWcWW
4 IL_7KJT_0017KJT0.26490Isolated non-canonical cWW pairA tRNAG2C3C4*G69C70C71cWWncWW
5 IL_1ZZ5_0021ZZ50.22360Isolated non-canonical cWW pairA+BRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
6 IL_1ZZ5_0041ZZ50.24140Isolated non-canonical cWW pairC+DRNA (15-mer) + RNA (14-mer)G10U11C12*G24U25C26cWWncWwcWW
7 IL_4V88_3854V880.26150Isolated non-canonical cWW pairA6 SSU rRNAA471U472A473*U35C36U37cWWcWWcWW
8 IL_8C3A_3938C3A0.21740Isolated non-canonical cWW pairCM SSU rRNAA469U470A471*U35C36U37cWWcWWcWW
9 IL_3FOZ_0013FOZ0.25590Isolated cWH basepairDtRNA(Phe)G63A64G65*C49U50U51cWWcWW
10 IL_4V88_4274V880.22790Isolated cWH basepairA6 SSU rRNAU822G823G824*C848C849A850cWWncHWcWW
11 IL_6F4H_0016F4H0.26160Isolated cWH basepairDU1-SL2G1G2C3*G20C21C22cWWncHWcWW
12 IL_6RA4_0026RA40.17620Isolated cWH basepairL+MRNA (9-mer)U403G404A405*U403G404A405cWWcHWcWW
13 IL_4KQ0_0044KQ00.15980Isolated cWH basepairE+BRNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
14 IL_4KQ0_0024KQ00.15870Isolated cWH basepairB+ERNA (19-mer)C6G7G8*C12G13G14cWWcHWcWW
15 IL_3D0M_0013D0M0.20820Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||16_545G11||||16_545A12||||16_545cWWcHWncWW
16 IL_3D0M_0023D0M0.20820Isolated cWH basepairXRNA (16-mer)U7||||16_545G8||||16_545A9||||16_545*U10G11A12cWWcHWncWW
17 IL_2H1M_0032H1M0.15270Isolated cWH basepairB+ARNA (16-mer)A21G22U23*A10A11U12cWWncHWcWW
18 IL_2H1M_0022H1M0.17520Isolated cWH basepairA+BRNA (16-mer)A5G6U7*A26A27U28cWWncHWcWW
19 IL_5J7L_0115J7L0.15990Isolated cWH basepairAA SSU rRNAC176G177C178*G144G145G146cWWcHWcWW
20 IL_4KQ0_0054KQ00.00270Isolated cWH basepairE+BRNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
21 IL_4KQ0_0014KQ00.00000Isolated cWH basepairB+ERNA (19-mer)C3G4G5*C15G16G17cWWcHWcWW
22 IL_6IA2_0036IA20.13310Isolated cWH basepairA+BRNA (19-mer)C9G10||AG11*C9G10||AG11||AcWWcHWcWW
23 IL_4J50_0014J500.14340Isolated cWH basepairB+ARNA (19-mer)C13A14G15*C7A8G9cWWcWW
24 IL_4J50_0034J500.14350Isolated cWH basepairA+BRNA (19-mer)C13A14G15*C7A8G9cWWcWW
25 IL_8SSW_0058SSW0.14890D+CRNA (28-MER)G5U6C7*G20G21C22cWWncWWacWW
26 IL_406D_002406D0.19430Isolated cWH basepairE+ARNA (17-mer)U25||AG26||AG27||A*U8||AG9||AG10||AcWWncHWcWW
27 IL_1L9A_0031L9A0.16680Bsignal recognition particle RNA S domainC123G124G125*C225U226G227cWWncWWcWW
28 IL_4KQ0_0034KQ00.13140Isolated cWH basepairB+ERNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
29 IL_3SJ2_0033SJ20.15360Isolated cWH basepairB+ARNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
30 IL_3SJ2_0023SJ20.14520Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C10G11G12*C10G11G12cWWcHWcWW
31 IL_3R1C_0173R1C0.14870Isolated cWH basepairR+QRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
32 IL_3R1C_0113R1C0.16080Isolated cWH basepairK+LRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
33 IL_3R1C_0123R1C0.15850Isolated cWH basepairL+KRNA (8-mer)C2G3G4*C5G6G7cWWcHWcWW
34 IL_3R1C_0183R1C0.13170Isolated cWH basepairQ+RRNA (8-mer)C5G6G7*C2G3G4cWWcHWcWW
35 IL_3W3S_0033W3S0.15310Isolated cWH basepairBSelenocysteine transfer RNAG47|||AG47|||BU47|||C*A47|||NG47|||OC47|||PcWWcHWcWW
36 IL_3CZW_0013CZW0.13320Isolated cWH basepairXRNA (16-mer)U7G8A9*U10||||2_555G11||||2_555A12||||2_555cWWcHWcWW
37 IL_3CZW_0023CZW0.13320Isolated cWH basepairXRNA (16-mer)U7||||2_555G8||||2_555A9||||2_555*U10G11A12cWWcHWcWW
38 IL_3SJ2_0013SJ20.14140Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C7G8G9*C13G14G15cWWcHWcWW
39 IL_4E5C_0014E5C0.12820Isolated cWH basepairB+ARNA (19-mer)C9G10G11*C9G10G11cWWcHWcWW
40 IL_3R1D_0023R1D0.13720Isolated cWH basepairA+BRNA (11-mer)C5G6G7*C5G6G7cWWcHWcWW
41 IL_4WF9_0454WF90.16700Isolated cWH basepairX LSU rRNAC1277G1278C1279*G1243G1244G1245cWWcHWcWW
42 IL_4V88_4534V880.28600Isolated cWH basepairA6 SSU rRNAU1290G1291G1292*C1323G1324A1325cWWcHWcWW
43 IL_7A0S_0427A0S0.35600Isolated non-canonical cWW pairX LSU rRNAC1252C1253G1254*C1218C1219G1220cWWncBWcWW
44 IL_7A0S_0267A0S0.36000Isolated non-canonical cWW pairX LSU rRNAC864A865U866*A936C937G938cWWcWWcWW
45 IL_8C3A_4138C3A0.26180Isolated cWH basepairCM SSU rRNAG387G388A389*U404A405C406cWWcHWcWW
46 IL_4V88_4054V880.27750Isolated cWH basepairA6 SSU rRNAG389G390A391*U406A407C408cWWcHWcWW
47 IL_4YHW_0014YHW0.25020Isolated non-canonical cWW pairE+CU6 snRNA fragmentC68C69U70*A11C12G13cWWcWW
48 IL_4WF9_0424WF90.20700Isolated non-canonical cWW pairX LSU rRNAC1160A1161C1162*G1081C1082G1083cWWncWWcWW
49 IL_6M6R_0026M6R0.26670Isolated non-canonical cWW pairBRNA (8-mer)G2||||7_555C3||||7_555C4||||7_555*G5C6C7cWWcWW
50 IL_6M6R_0016M6R0.26670Isolated non-canonical cWW pairBRNA (8-mer)G2C3C4*G5||||7_555C6||||7_555C7||||7_555cWWcWW
51 IL_5Y7M_0075Y7M0.29130Isolated non-canonical cWW pairDRNA (52-MER)G37A38U39*A11C12C13cWWcWWcWW
52 IL_5F5F_0035F5F0.25470Isolated cWH basepairFRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
53 IL_5F5F_0015F5F0.27610Isolated cWH basepairBRNA (20-mer)U5G6C7*G14G15A16cWWcHWcWW
54 IL_4PDQ_0044PDQ0.30670Isolated non-canonical cWW pairB+ARNA (23-mer)G28U29C30*G19U20C21cWWncWwcWW
55 IL_4V9K_0644V9K0.32110Isolated non-canonical cWW pairAW tRNAC50A51G52*C62C63G64cWWncWWacWW
56 IL_4WF9_0554WF90.34320X LSU rRNAG1465G1466G1467*C1622U1623C1624cWWcWW
57 IL_4P3U_0014P3U0.37630Isolated non-canonical cWW pairA+BRNA (23-mer)G5U6C7*G42U43C44cWWcWW
58 IL_8C3A_4078C3A0.46351Isolated cWH basepairCM SSU rRNAG285A286U287*A263U265C266cWWcWW
59 IL_5M0H_0025M0H0.55022Multiple bulged bases, near cWWAASH1 E3 (42 nt-TL/TLR)G8U11C12*G34A35C36ncWWcWWcWW
60 IL_8C3A_4688C3A0.47950Isolated non-canonical cWW pairCM SSU rRNAU1483U1484G1485*C1496U1497G1498cWWcWW
61 IL_4WF9_0184WF90.51670Isolated non-canonical cWW pairX LSU rRNAU705U706G707*U638U639G640cWWcWW
62 IL_4KYY_0024KYY0.51560Isolated non-canonical cWW pairB+ARNA 17-merU8U9G10*U8U9G10cWWcWW
63 IL_4V88_4704V880.44010Isolated non-canonical cWW pairA6 SSU rRNAU1665U1666A1667*U1734U1735G1736cWWcWW
64 IL_8C3A_4778C3A0.43780Isolated non-canonical cWW pairCM SSU rRNAU1652U1653A1654*U1721U1722G1723ncWWncWwcWW
65 IL_7A0S_1077A0S0.49900Isolated non-canonical cWW pairY 5S rRNAU82C83G84*C97C98G99cWWncBWcWW
66 IL_5TBW_0165TBW0.40840Isolated non-canonical cWW pair1 LSU rRNAU429U430U431*A628U629A630cWWcWW
67 IL_4Y1M_0054Y1M0.40420Isolated non-canonical cWW pairBE. coli yybP-ykoY riboswitchA103U104A105*U4U5U6cWWncWwcWW
68 IL_8AF0_0028AF00.33180Isolated cWH basepairD+CRNA (19-mer)G34U35C36*G34U35C36cWWcHWcWW
69 IL_2R8S_0052R8S0.45985cWH basepair with bulged basesRP4-P6 RNA RIBOZYME DOMAINU182A187C189*G134U135A136cWWcHWcWW
70 IL_1GID_0131GID0.46285BP4-P6 RNA RIBOZYME DOMAINU182A187C189*G134U135A136cWWcHWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG15
GUC*GUC5
UGA*UGA5
GCC*GCC3
GAG*CUU2
AUA*UCU2
AGU*AAU2
CGC*GGG2
CAG*CAG2
GGA*UAC2
UGC*GGA2
UUG*UUG2
UUA*UUG2
UAAUAAGC*GUA2
GGA*UUC1
CAA*UCG1
UGG*CCA1
GGC*GCC1
GUC*GGC1
UGG*UGG1
CGG*CUG1
GGU*AGC1
UGG*CGA1
CCG*CCG1
CAU*ACG1
CCU*ACG1
CAC*GCG1
GAU*ACC1
CAG*CCG1
GGG*CUC1
GAU*AAUC1
GAAUC*GAC1
UUG*CUG1
UCG*CCG1
UUU*AUA1
AUA*UUU1
Non-Watson-Crick part of the motif
SequenceCounts
G*G27
U*U12
C*C6
A*C5
G*A4
G*U3
A*U2
U*C2
G*C2
A*A2
AAUAAG*U2
U*G1
A*AU1
AAU*A1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Isolated cWH basepair (38)
  • Isolated non-canonical cWW pair (24)
  • (6)
  • cWH basepair with bulged bases (1)
  • Multiple bulged bases, near cWW (1)
    • Basepair signature
    cWW-cHW-cWW
    Heat map statistics
    Min 0.00 | Avg 0.30 | Max 0.82
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