Motif IL_71288.1 Version IL_71288.1 of this group appears in releases 0.7 to 1.9
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3MEI_004 | 3MEI | 0.5021 | 2 | A+B | RNA (23-mer) | G | 13 | C | 15 | G | 17 | * | C | 7 | G | 8 | C | 9 | C | 10 | cWW | cSW | cWW | |
| 2 | IL_2O3V_003 | 2O3V | 0.4861 | 2 | A+B | RNA (23-mer) | A | 15 | A | 17 | G | 19 | * | C | 30 | G | 31 | C | 32 | U | 33 | cWW | cSW | cWW | |
| 3 | IL_3V2F_105 | 3V2F | 0.3653 | 2 | A | 23S Ribosomal RNA | C | 2870 | C | 2871 | C | 2874 | * | G | 2843 | G | 2844 | G | 2845 | G | 2846 | cWW | cSW | cWW | |
| 4 | IL_1NUV_003 | 1NUV | 0.1077 | 3 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | |
| 5 | IL_429D_002 | 429D | 0.0000 | 3 | C+D | RNA (13-mer) + RNA (11-mer) | C | 122 | C | 123 | C | 127 | * | G | 143 | G | 144 | A | 145 | G | 146 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 2 |
| GCCUG*CGCC | 1 |
| AAAAG*CGCU | 1 |
| GGGG*CCGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 2 |
| CCU*GC | 1 |
| AAA*GC | 1 |
| GG*CGA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_71288.1 | Only in the parent motif |
|---|---|---|---|
| IL_40239.1 Compare | IL_429D_002, IL_1NUV_003 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_429D_001, IL_1NUV_001, IL_1NUV_002, IL_1NUV_004, IL_2AW7_010, IL_1FJG_008 |
| IL_69124.1 Compare | IL_3MEI_004, IL_2O3V_003 | IL_429D_002, IL_1NUV_003, IL_3V2F_105 | IL_3UXR_105, IL_3U5F_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_71288.1 | Only in the child motif |
|---|---|---|---|
| IL_97296.1 Compare | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_429D_002, IL_1NUV_003 | IL_3U5F_017 |
| IL_46301.1 Compare | IL_429D_002, IL_1NUV_003 | IL_3MEI_004, IL_2O3V_003, IL_3V2F_105 | IL_3BNQ_002, IL_1NUV_002, IL_1FJG_008, IL_2AW7_010, IL_2QBG_108 |
- Annotations
- Basepair signature
- cWW-cSW-R-cWW
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.50
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