Motif IL_71371.1 Version IL_71371.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7P_064 | 3J7P | 0.3607 | 0 | 5 | LSU rRNA | A | 1871 | G | 1872 | A | 1873 | * | U | 1861 | U | 1862 | U | 1863 | cWW | ncWS | cWW | |
| 2 | IL_5AN9_006 | 5AN9 | 0.3047 | 0 | N | LSU rRNA | A | 1370 | G | 1371 | A | 1372 | * | U | 1360 | U | 1361 | U | 1362 | cWW | ncWS | cWW | |
| 3 | IL_4V88_293 | 4V88 | 0.3199 | 0 | A5 | LSU rRNA | A | 1133 | G | 1134 | A | 1135 | * | U | 1123 | U | 1124 | U | 1125 | cWW | ncWS | cWW | |
| 4 | IL_5FDU_030 | 5FDU | 0.2802 | 0 | Isolated cWS basepair (H) | 1A | LSU rRNA | U | 951 | G | 952 | U | 953 | * | A | 917 | U | 918 | A | 919 | cWW | ncWS | cWW |
| 5 | IL_4TS0_003 | 4TS0 | 0.2859 | 0 | Y+X | Spinach RNA aptamer, bimolecular construct | C | 80 | G | 81 | U | 82 | * | A | 17 | U | 18 | G | 19 | cWW | ncWS | cWW | |
| 6 | IL_4V88_303 | 4V88 | 0.0982 | 1 | Isolated cWS basepair (H) | A5 | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW |
| 7 | IL_4V9F_046 | 4V9F | 0.0000 | 1 | Isolated cWS basepair | 0 | LSU rRNA | C | 1301 | G | 1302 | C | 1303 | * | G | 1351 | C | 1353 | G | 1354 | cWW | cWS | cWW |
| 8 | IL_4V91_063 | 4V91 | 0.0972 | 1 | 1 | LSU rRNA | C | 1376 | G | 1377 | U | 1378 | * | A | 1428 | U | 1430 | G | 1431 | cWW | cWS | cWW | |
| 9 | IL_3J79_055 | 3J79 | 0.1108 | 1 | A | LSU rRNA | C | 1525 | G | 1526 | U | 1527 | * | A | 1577 | U | 1579 | G | 1580 | cWW | cWS | cWW | |
| 10 | IL_4IOA_043 | 4IOA | 0.1180 | 1 | Isolated cWS basepair (H) | X | LSU rRNA | C | 1210 | G | 1211 | U | 1212 | * | A | 1260 | U | 1262 | G | 1263 | cWW | cWS | cWW |
| 11 | IL_5FDU_046 | 5FDU | 0.1611 | 1 | Isolated cWS basepair (H) | 1A | LSU rRNA | C | 1241 | G | 1242 | U | 1243 | * | A | 1293 | U | 1295 | G | 1296 | cWW | cWS | cWW |
| 12 | IL_5J7L_286 | 5J7L | 0.2071 | 1 | Isolated cWS basepair | DA | LSU rRNA | C | 1196 | G | 1197 | U | 1198 | * | A | 1247 | U | 1249 | G | 1250 | cWW | cWS | cWW |
| 13 | IL_3J7P_212 | 3J7P | 0.5715 | 2 | S2 | SSU rRNA | U | 1329 | A | 1332 | U | 1333 | * | A | 1498 | U | 1499 | G | 1500 | cWW | ncWS | ||
| 14 | IL_3J9W_041 | 3J9W | 0.6646 | 2 | Isolated cWS basepair (H) | AA | SSU rRNA | U | 1062 | A | 1065 | U | 1066 | * | A | 1213 | U | 1214 | G | 1215 | cWW | ncWS | cWW |
| 15 | IL_3JAM_062 | 3JAM | 0.6018 | 2 | Isolated cWS basepair (H) | 2 | SSU rRNA | U | 1271 | A | 1274 | U | 1275 | * | A | 1434 | U | 1435 | G | 1436 | cWW | ncWS | ncWW |
| 16 | IL_3J7A_057 | 3J7A | 0.5882 | 2 | A | SSU rRNA | U | 1373 | A | 1376 | U | 1377 | * | A | 1682 | U | 1683 | G | 1684 | cWW | ncWS | cWW | |
| 17 | IL_1FJG_041 | 1FJG | 0.6056 | 2 | Isolated cWS basepair (H) | A | SSU rRNA | U | 1052 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
| 18 | IL_4V88_476 | 4V88 | 0.9185 | 0 | Other IL | A6 | SSU rRNA | C | 1711 | A | 1712 | G | 1713 | * | U | 1688 | A | 1689 | G | 1690 | ncWW | ncWW | |
| 19 | IL_1O9M_003 | 1O9M | 1.0516 | 1 | A+B | EUBACTERIAL A-SITE | G | 1491 | A | 1493 | G | 1494 | * | C | 1407 | A | 1408 | C | 1409 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGU*AGUG | 6 |
| UGCAU*AUG | 5 |
| AGA*UUU | 3 |
| UGU*AUA | 1 |
| CGU*AUG | 1 |
| CGC*GACG | 1 |
| CAG*UAG | 1 |
| GAAG*CAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*GU | 6 |
| G*U | 5 |
| GCA*U | 5 |
| G*AC | 1 |
| A*A | 1 |
| AA*A | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Isolated cWS basepair (H) (7)
- Isolated cWS basepair (2)
- Other IL (1)
- Basepair signature
- cWW-cWS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.49 | Max 1.10
Coloring options: