Motif IL_71565.1 Version IL_71565.1 of this group appears in releases 0.7 to 0.12
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_086 | 3U5F | 0.3335 | 1 | 6 | 18S rRNA | U | 1656 | G | 1658 | * | U | 1743 | A | 1744 | cWW | cWW | |
| 2 | IL_1S72_093 | 1S72 | 0.0000 | 3 | Bulged stacked bases (H) | 0 | LSU rRNA | A | 2746 | G | 2750 | * | U | 2732 | U | 2733 | cWW | cWW |
| 3 | IL_3V2F_082 | 3V2F | 0.4027 | 9 | A | 23S Ribosomal RNA | G | 2110 | G | 2120 | * | C | 2178 | C | 2179 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*UA | 1 |
| ACGUG*UU | 1 |
| GCGUAGGAUAG*CC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U* | 1 |
| CGU* | 1 |
| CGUAGGAUA* | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 |
|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_71565.1 | Only in the parent motif |
|---|---|---|---|
| IL_50767.1 Compare | IL_1S72_093 | IL_3V2F_082, IL_3U5F_086 | |
| IL_18947.1 Compare | IL_3U5F_086 | IL_3V2F_082, IL_1S72_093 | IL_2ZJR_098, IL_3UXR_102, IL_2QBG_097 |
Children motifs
| Child motif | Common motif instances | Only in IL_71565.1 | Only in the child motif |
|---|---|---|---|
| IL_71565.2 Compare | IL_3V2F_082, IL_1S72_093, IL_3U5F_086 | IL_1KXK_003 |
- Annotations
-
- (2)
- Bulged stacked bases (H) (1)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.33 | Avg 0.31 | Max 0.64
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