Motif IL_73059.1 Version IL_73059.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-2 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_081 | 2ZJR | 0.0000 | 2 | Isolated tHS basepair with bulges (H) | X | LSU rRNA | C | 2276 | A | 2277 | * | A | 2278 | U | 2296 | G | 2297 | G | 2300 | cWW | ntHS | cWW | |
| 2 | IL_1NTB_003 | 1NTB | 0.2160 | 0 | B+A | RNA (18-mer) | G | 110 | C | 18 | * | G | 111 | C | 15 | U | 16 | U | 17 | cWW | cWW | |||
| 3 | IL_1S72_078 | 1S72 | 1.1043 | 2 | 0 | LSU rRNA | C | 2331 | A | 2332 | * | G | 2333 | C | 2351 | G | 2352 | G | 2355 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAA*UGUAG | 1 |
| GG*CUUC | 1 |
| CAG*CGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUA | 1 |
| *UU | 1 |
| A*GAA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | > 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73059.1 | Only in the parent motif |
|---|---|---|---|
| IL_53918.2 Compare | IL_1NTB_003 | IL_2ZJR_081, IL_1S72_078 | IL_1S72_060, IL_2ZJR_061 |
| IL_58602.2 Compare | IL_1S72_078 | IL_1NTB_003, IL_2ZJR_081 | IL_2GDI_004, IL_1DUQ_003, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 |
| IL_21059.1 Compare | IL_2ZJR_081 | IL_1NTB_003, IL_1S72_078 | IL_1FJG_003, IL_3OWZ_002, IL_3OWZ_006, IL_3F1H_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_73059.1 | Only in the child motif |
|---|---|---|---|
| IL_47067.1 Compare | IL_2ZJR_081, IL_1S72_078 | IL_1NTB_003 | IL_3PYO_074, IL_3PYO_076, IL_3O58_116, IL_2ZJR_078, IL_3PYO_011, IL_1S72_076, IL_2QBG_082 |
| IL_38336.1 Compare | IL_1NTB_003 | IL_2ZJR_081, IL_1S72_078 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_050, IL_3DIR_004, IL_3O30_044, IL_3O58_078, IL_3O58_094 |
- Annotations
-
- (2)
- Isolated tHS basepair with bulges (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.22 | Avg 0.54 | Max 1.10
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