Motif IL_73276.1 Version IL_73276.1 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-3 | 1-7 | 2-4 | 2-6 | 3-7 | 4-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_047 | 1FJG | 0.8912 | 0 | A | SSU rRNA | C | 1128 | C | 1129 | A | 1130 | G | 1131 | C | 1132 | * | G | 1142 | G | 1143 | ncSH | cWW | ncWS | cWW | ||||
| 2 | IL_4A1C_005 | 4A1C | 0.5380 | 0 | 3 | 5S RRNA | U | 52 | U | 53 | A | 54 | A | 55 | G | 56 | * | C | 26 | A | 27 | ncSH | cWW | ncWW | cWS | ||||
| 3 | IL_2AW7_018 | 2AW7 | 0.3821 | 0 | A | 16S ribosomal RNA | A | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | U | 390 | cSH | cWW | ntWH | cWS | cWW | |||
| 4 | IL_1FJG_015 | 1FJG | 0.3807 | 0 | A | SSU rRNA | G | 371 | C | 372 | A | 373 | A | 374 | U | 375 | * | A | 389 | C | 390 | cWW | tWH | cWS | cWW | ||||
| 5 | IL_2ZJR_028 | 2ZJR | 0.2538 | 2 | X | LSU rRNA | G | 877 | C | 878 | A | 879 | C | 880 | U | 881 | * | A | 921 | C | 924 | ntSW | cWW | ncSH | tWH | cWS | cWW | ||
| 6 | IL_3V2F_029 | 3V2F | 0.2625 | 2 | A | 23S Ribosomal RNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | tSW | cWW | ncSH | tWH | cWS | cWW | ||
| 7 | IL_3U5H_042 | 3U5H | 0.3043 | 3 | 5 | 25S rRNA | G | 999 | C | 1000 | A | 1002 | A | 1003 | U | 1004 | * | A | 1046 | C | 1049 | cWW | tWH | cWS | cWW | ||||
| 8 | IL_4A1B_046 | 4A1B | 0.3323 | 3 | 1 | 26S RRNA | G | 1025 | C | 1026 | A | 1028 | A | 1029 | U | 1030 | * | A | 1072 | C | 1075 | ncWW | tWH | cWS | cWW | ||||
| 9 | IL_2XZM_059 | 2XZM | 0.1674 | 1 | A | 18S RRNA | U | 1589 | C | 1590 | C | 1591 | C | 1592 | U | 1593 | * | A | 1130 | A | 1132 | ncSH | cWW | tWH | cWS | cWW | |||
| 10 | IL_3U5F_060 | 3U5F | 0.0000 | 2 | 6 | 18S rRNA | U | 1617 | C | 1618 | C | 1619 | C | 1620 | U | 1621 | * | A | 1157 | A | 1160 | ncSH | cWW | ncSH | tWH | cWS | cWW | ||
| 11 | IL_2QBG_102 | 2QBG | 0.1300 | 1 | B | 23S rRNA | U | 2680 | C | 2681 | A | 2682 | C | 2683 | U | 2684 | * | A | 2725 | A | 2727 | ncSH | cWW | ncSH | tWH | cWS | cWW | ||
| 12 | IL_1KOG_002 | 1KOG | 0.1537 | 1 | J | Threonyl-tRNA synthetase mRNA | C | 96 | C | 97 | A | 98 | C | 99 | U | 100 | * | A | 74 | G | 76 | ncSH | cWW | ncSH | tWH | cWS | cWW | ||
| 13 | IL_3V2F_100 | 3V2F | 0.1623 | 1 | A | 23S Ribosomal RNA | C | 2680 | C | 2681 | U | 2682 | C | 2683 | U | 2684 | * | A | 2725 | G | 2727 | cWW | cSH | tWH | tHS | cWS | cWW | ||
| 14 | IL_2ZJR_096 | 2ZJR | 0.2099 | 1 | X | LSU rRNA | C | 2659 | C | 2660 | G | 2661 | C | 2662 | U | 2663 | * | A | 2705 | G | 2707 | cWW | ncSH | tWH | cWS | cWW | |||
| 15 | IL_2QBG_050 | 2QBG | 0.3784 | 1 | B | 23S rRNA | C | 1319 | C | 1320 | A | 1321 | A | 1322 | C | 1323 | * | G | 1331 | G | 1333 | cWW | ncWS | cWW | |||||
| 16 | IL_1S72_091 | 1S72 | 0.3139 | 1 | 0 | LSU rRNA | C | 2717 | C | 2718 | A | 2719 | C | 2720 | U | 2721 | * | A | 2761 | G | 2763 | cWW | cSH | tWH | cWS | cWW | |||
| 17 | IL_1S72_051 | 1S72 | 0.2383 | 1 | 0 | LSU rRNA | G | 1425 | C | 1426 | A | 1427 | C | 1428 | U | 1429 | * | A | 1437 | C | 1439 | cWW | cSH | tWH | cWS | cWW | |||
| 18 | IL_3V2F_048 | 3V2F | 0.2893 | 1 | A | 23S Ribosomal RNA | G | 1319 | C | 1320 | A | 1321 | A | 1322 | U | 1323 | * | A | 1331 | C | 1333 | cWW | ncSH | tWH | cWS | cWW | |||
| 19 | IL_2QBG_033 | 2QBG | 0.2617 | 2 | B | 23S rRNA | G | 864 | C | 865 | A | 866 | C | 867 | U | 868 | * | A | 909 | C | 912 | cWW | cSH | tWH | cWS | cWW | |||
| 20 | IL_2ZJR_047 | 2ZJR | 0.3968 | 1 | X | LSU rRNA | G | 1332 | G | 1333 | A | 1334 | A | 1335 | G | 1336 | * | C | 1344 | C | 1346 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCACU*AAAC | 3 |
| GCGAAU*AAAC | 2 |
| CCAGC*GG | 1 |
| UUAAG*CA | 1 |
| ACAAU*AU | 1 |
| GCAAU*AC | 1 |
| ACA*UCCCU | 1 |
| UCCCU*ACCA | 1 |
| UCACU*AAA | 1 |
| CCACU*AUG | 1 |
| CCUCU*AUG | 1 |
| CCGCU*AUG | 1 |
| CCAAC*GGG | 1 |
| CCACU*ACG | 1 |
| GCACU*AGC | 1 |
| GCAAU*AGC | 1 |
| GGAAG*CGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAC*AA | 3 |
| CAA* | 2 |
| CGAA*AA | 2 |
| CAA*G | 2 |
| CAG* | 1 |
| UAA* | 1 |
| C*CCC | 1 |
| CCC*CC | 1 |
| CAC*A | 1 |
| CAC*U | 1 |
| CUC*U | 1 |
| CGC*U | 1 |
| CAC*C | 1 |
| CAC*G | 1 |
| GAA*G | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_73276.1 | Only in the parent motif |
|---|---|---|---|
| IL_54307.1 Compare | IL_4A1C_005, IL_3U5H_042, IL_2ZJR_047, IL_2QBG_033, IL_2QBG_102, IL_3U5F_060, IL_2ZJR_028, IL_2QBG_050, IL_2XZM_059, IL_1S72_091, IL_1FJG_015, IL_2ZJR_096, IL_2AW7_018, IL_1FJG_047, IL_1KOG_002, IL_4A1B_046, IL_1S72_051 | IL_3V2F_100, IL_3V2F_029, IL_3V2F_048 | IL_3UXR_048, IL_3UXR_029, IL_3UXR_100, IL_1KOG_008, IL_1KOG_006, IL_1KOG_007, IL_1KOG_004, IL_1KOG_005, IL_1KOG_003, IL_1KOG_001 |
Children motifs
| Child motif | Common motif instances | Only in IL_73276.1 | Only in the child motif |
|---|---|---|---|
| IL_73276.2 Compare | IL_4A1C_005, IL_3U5H_042, IL_2QBG_033, IL_2QBG_102, IL_3U5F_060, IL_1FJG_047, IL_2QBG_050, IL_1S72_091, IL_1FJG_015, IL_3V2F_029, IL_3V2F_100, IL_3V2F_048, IL_2AW7_018, IL_2XZM_059, IL_1KOG_002, IL_4A1B_046, IL_1S72_051 | IL_2ZJR_028, IL_2ZJR_047, IL_2ZJR_096 | IL_4IOA_049, IL_4IOA_028, IL_4IOA_097 |
- Annotations
- Basepair signature
- cWW-tWH-cSH-L-cWS-cWW
- Heat map statistics
- Min 0.13 | Avg 0.39 | Max 0.99
Coloring options: