Motif IL_74322.2 Version IL_74322.2 of this group appears in releases 4.1 to 4.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-10 | 2-11 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_9AXU_113 | 9AXU | 0.7185 | 0 | 2 | LSU rRNA | A | 3199 | U | 3200 | A | 3201 | A | 3202 | C | 3203 | G | 3204 | * | C | 3222 | A | 3223 | G | 3224 | A | 3225 | A | 3226 | U | 3227 | cWW | tWH | tHS | ncWWa | cWW | |
| 2 | IL_9E6Q_072 | 9E6Q | 0.3869 | 0 | 1 | LSU rRNA | PSU | 1987 | G | 1988 | A | 1989 | A2M | 1990 | C | 1991 | C | 1992 | * | G | 2007 | C | 2008 | G | 2009 | A | 2010 | A2M | 2011 | G | 2012 | cWW | tSH | ncBW | cWW | ||
| 3 | IL_4QLM_002 | 4QLM | 0.0000 | 0 | A | cyclic di-AMP riboswitch | G | 27 | G | 28 | A | 29 | C | 30 | C | 31 | C | 32 | * | G | 96 | C | 97 | U | 98 | A | 99 | A | 100 | C | 101 | cWW | tSH | ncBW | cWW | ||
| 4 | IL_6N5P_001 | 6N5P | 0.1028 | 0 | A | cyclic di-AMP riboswitch | G | 31 | G | 32 | A | 33 | A | 34 | C | 35 | C | 36 | * | G | 99 | C | 100 | U | 101 | A | 102 | A | 103 | C | 104 | cWW | tSH | ncBW | cWW | ||
| 5 | IL_4QK9_001 | 4QK9 | 0.1136 | 0 | A | cyclic di-AMP riboswitch | G | 29 | G | 30 | A | 31 | C | 32 | C | 33 | C | 34 | * | G | 98 | C | 99 | U | 100 | A | 101 | A | 102 | C | 103 | cWW | tSH | ncBW | cWW | ||
| 6 | IL_4W90_002 | 4W90 | 0.1452 | 0 | C | cyclic di-AMP riboswitch | G | 28 | G | 29 | A | 30 | C | 31 | C | 32 | C | 33 | * | G | 101 | C | 102 | U | 103 | A | 104 | A | 105 | C | 106 | cWW | tSH | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGACCC*GCUAAC | 3 |
| AUAACG*CAGAAU | 1 |
| (PSU)GA(A2M)CC*GCGA(A2M)G | 1 |
| GGAACC*GCUAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GACC*CUAA | 3 |
| UAAC*AGAA | 1 |
| GA(A2M)C*CGA(A2M) | 1 |
| GAAC*CUAA | 1 |
Release history
| Release | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 |
|---|---|---|---|---|---|---|---|
| Date | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (6)
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW
- Heat map statistics
- Min 0.10 | Avg 0.33 | Max 0.77
Coloring options: