IL_74641.2

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6	1-6	2-3	2-4	2-5	4-5
1	IL_3D0U_004	3D0U	0.4986	Major groove platform; stack outside cWW	A	Lysine riboswitch	C	35	A	36	U	37	C	38	*	G	51	G	52	cWW		cSH		cWW
2	IL_3DIL_004	3DIL	0.5739	Major groove platform; stack outside cWW	A	Lysine riboswitch	C	38	A	39	U	40	C	41	*	G	54	G	55	cWW				cWW
3	IL_1NTA_003	1NTA	0.4784	Major groove platform; stack outside cWW	A+B	RNA (22-mer) + RNA (18-mer)	C	15	U	16	U	17	C	18	*	G	110	G	111	cWW		ncSH		cWW
4	IL_7A0S_023	7A0S	0.3691	Major groove platform; stack outside cWW	X	LSU rRNA	U	857	G	858	U	859	U	860	*	A	944	G	945	cWW				cWW
5	IL_6N5P_003	6N5P	0.2283	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	94	G	95	A	96	C	97	*	G	44	G	45	cWW			tSH	cWW
6	IL_8GLP_235	8GLP	0.2109	Major groove platform; stack outside cWW (H)	S2	SSU rRNA	C	1019	A	1020	U	1021	U	1022	*	A	922	G	923	cWW				cWW
7	IL_8P9A_417	8P9A	0.2163	Major groove platform; stack outside cWW	sR	SSU rRNA	C	962	A	963	U	964	U	965	*	A	865	G	866	cWW	ncSH			cWW
8	IL_4WF9_049	4WF9	0.1788	Major groove platform; stack outside cWW	X	LSU rRNA	G	1347	U	1348	U	1349	U	1350	*	A	1647	C	1648	cWW				cWW
9	IL_9DFE_049	9DFE	0.1976	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1310	G	1311	U	1312	U	1313	*	A	1603	C	1604	cWW	cSH			cWW
10	IL_7A0S_046	7A0S	0.2601	Major groove platform; stack outside cWW	X	LSU rRNA	G	1323	G	1324	U	1325	U	1326	*	A	1619	C	1620	cWW				cWW
11	IL_8GLP_089	8GLP	0.2541		L5	LSU rRNA	G	2406	G	2407	U	2408	U	2409	*	A	2783	C	2784	cWW				cWW
12	IL_9AXU_058	9AXU	0.2356		2	LSU rRNA	G	1526	G	1527	U	1528	U	1529	*	A	1890	C	1891	cWW				cWW
13	IL_4V9F_050	4V9F	0.2336	Major groove platform; stack outside cWW	0	LSU rRNA	G	1416	G	1417	U	1418	U	1419	*	A	1678	C	1679	cWW				cWW
14	IL_9E6Q_052	9E6Q	0.2377		1	LSU rRNA	G	1439	G	1440	U	1441	U	1442	*	A	1745	C	1746	cWW				cWW
15	IL_8B0X_109	8B0X	0.1735	Major groove platform; stack outside cWW (H)	a	LSU rRNA	G	1312	G	1313	U	1314	U	1315	*	A	1605	C	1606	cWW				cWW
16	IL_4V9F_008	4V9F	0.0910	Major groove platform; stack outside cWW	0	LSU rRNA	C	245	G	246	A	247	A	248	*	U	265	G	266	cWW			tSH	cWW
17	IL_9E6Q_008	9E6Q	0.0000		1	LSU rRNA	C	255	A	256	A	257	A	258	*	U	286	G	287	cWW			ntSH	cWW
18	IL_7A0S_061	7A0S	0.1566	Major groove platform; stack outside cWW	X	LSU rRNA	G	1683	G	1684	A	1685	A	1686	*	U	1976	C	1977	cWW			tSH	cWW
19	IL_9AXU_072	9AXU	0.1526		2	LSU rRNA	G	1953	G	1954	A	1955	A	1956	*	U	2424	C	2425	cWW			tSH	cWW
20	IL_8GLP_304	8GLP	0.1481		L5	LSU rRNA	G	2847	G	2848	A	2849	A	2850	*	U	3840	OMC	3841	cWW			tSH	cWW
21	IL_8P9A_304	8P9A	0.1499	Major groove platform; stack outside cWW	AR	LSU rRNA	G	1898	G	1899	A	1900	A	1901	*	U	2336	C	2337	cWW			tSH	cWW
22	IL_8OI5_078	8OI5	0.1688		1	LSU rRNA	G	1894	G	1895	A	1896	A	1897	*	U	2314	C	2315	cWW			tSH	cWW
23	IL_9E6Q_063	9E6Q	0.1591		1	LSU rRNA	G	1810	G	1811	A	1812	A	1813	*	U	2114	OMC	2115	cWW			tSH	cWW
24	IL_8B0X_125	8B0X	0.1729		a	LSU rRNA	G	1668	G	1669	A	1670	A	1671	*	U	1997	C	1998	cWW			tSH	cWW
25	IL_4WF9_064	4WF9	0.1658	Major groove platform; stack outside cWW	X	LSU rRNA	G	1710	G	1711	A	1712	A	1713	*	U	2020	C	2021	cWW			tSH	cWW
26	IL_4V9F_061	4V9F	0.1973	Major groove platform; stack outside cWW	0	LSU rRNA	G	1744	G	1745	A	1746	A	1747	*	U	2034	C	2035	cWW			tSH	cWW
27	IL_9DFE_065	9DFE	0.1853	Major groove platform; stack outside cWW	1A	LSU rRNA	G	1666	G	1667	A	1668	A	1669	*	U	1993	C	1994	cWW			tSH	cWW
28	IL_4LFB_027	4LFB	0.2170	Major groove platform; stack outside cWW	A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
29	IL_8B0X_030	8B0X	0.2220		A	SSU rRNA	U	751	G	752	A	753	C	754	*	G	654	A	655	cWW			tSH	cWW
30	IL_1KUQ_001	1KUQ	0.2570	Major groove platform; stack outside cWW	B	16S RIBOSOMAL RNA FRAGMENT	U	50	G	51	A	52	C	53	*	G	18	A	19	cWW		ncSH	tSH	cWW
31	IL_4QLM_004	4QLM	0.2188	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	91	G	92	U	93	C	94	*	G	39	G	40	cWW			tSH	cWW
32	IL_4QK9_003	4QK9	0.2153	Major groove platform; stack outside cWW	A	cyclic di-AMP riboswitch	C	93	G	94	U	95	C	96	*	G	43	G	44	cWW			ntSH	cWW
33	IL_4W90_004	4W90	0.2440	Major groove platform; stack outside cWW	C	cyclic di-AMP riboswitch	C	96	G	97	U	98	C	99	*	G	58	G	59	cWW			ntSH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGAA*UC	8
GGUU*AC	7
UGAC*GA	3
CGUC*GG	3
CAUC*GG	2
CAUU*AG	2
GGAA*U(OMC)	2
CUUC*GG	1
UGUU*AG	1
CGAC*GG	1
GUUU*AC	1
CGAA*UG	1
CAAA*UG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*	15
GU*	11
AU*	4
UU*	2
AA*	1

Release history

Release	4.1	4.2	4.3	4.4
Date	2025-09-10	2025-10-08	2025-11-05	2025-12-03
Status	Updated, 1 parent	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_74641.2 Version IL_74641.2 of this group appears in releases 4.1 to 4.4 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_74641.2 Version IL_74641.2 of this group appears in releases 4.1 to 4.4

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Csv

Json