Motif IL_74852.1 Version IL_74852.1 of this group appears in releases 4.1 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-4 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_008 | 7A0S | 0.9430 | 0 | X | LSU rRNA | C | 354 | G | 355 | A | 356 | A | 357 | C | 358 | G | 359 | * | C | 303 | A | 304 | A | 305 | G | 306 | cWW | ntSH | ncSH | cWW |
| 2 | IL_9E9Q_002 | 9E9Q | 0.8697 | 2 | A | Sarbecovirus 5'UTR | C | 46 | G | 47 | A | 48 | C | 50 | U | 52 | C | 53 | * | G | 15 | C | 16 | A | 17 | G | 18 | cWW | tSH | cWW | |
| 3 | IL_1NUV_003 | 1NUV | 0.0000 | 0 | E+F | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW | |
| 4 | IL_1NUV_001 | 1NUV | 0.4422 | 0 | A+B | RNA (13-mer) + RNA (11-mer) | C | 22 | C | 23 | G | 24 | A | 25 | G | 26 | C | 27 | * | G | 43 | G | 44 | A | 45 | G | 46 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCGAGC*GGAG | 2 |
| CGAACG*CAAG | 1 |
| CGAUCAUC*GCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAG*GA | 2 |
| GAAC*AA | 1 |
| GAUCAU*CA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Heat map statistics
- Min 0.44 | Avg 0.61 | Max 0.97
Coloring options: