Motif IL_75289.1 Version IL_75289.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_007 | 4LFB | 0.7165 | 1 | Multiple bulged bases | A | SSU rRNA | U | 129 | A | 130 | C | 131 | * | G | 231 | G | 232 | cWW | cWW |
| 2 | IL_8OI5_099 | 8OI5 | 0.6631 | 0 | Single bulged A (H) | 1 | LSU rRNA | C | 2597 | A | 2598 | C | 2599 | * | G | 2586 | G | 2587 | cWW | cWW |
| 3 | IL_8T29_003 | 8T29 | 0.3218 | 0 | Other IL | R | RNA (90-MER) | C | 54 | A | 55 | A | 56 | * | U | 65 | G | 66 | cWW | cWW |
| 4 | IL_4PWD_008 | 4PWD | 0.0000 | 0 | T+P | RNA (27-mer) | A | 715 | A | 715|||A | A | 716 | * | DT | 812 | DT | 813 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAC*GG | 1 |
| CAC*GG | 1 |
| CAA*UG | 1 |
| AAA*TT | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| GA* | 1 |
- Annotations
-
- Multiple bulged bases (1)
- (1)
- Single bulged A (H) (1)
- Other IL (1)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.32 | Avg 0.45 | Max 0.81
Coloring options: