Motif IL_76004.2 Version IL_76004.2 of this group appears in releases 3.90 to 3.90
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7VFT_005 | 7VFT | 0.3133 | 0 | Isolated non-canonical cWW contact | A | RNA (23-mer) | C | 17||||12_555 | A | 18||||12_555 | G | 19||||12_555 | * | C | 5 | A | 6 | G | 7 | cWW | cWW | |
| 2 | IL_7VFT_001 | 7VFT | 0.3133 | 0 | Isolated non-canonical cWW contact | A | RNA (23-mer) | C | 17 | A | 18 | G | 19 | * | C | 5||||12_555 | A | 6||||12_555 | G | 7||||12_555 | cWW | cWW | |
| 3 | IL_7A0S_030 | 7A0S | 0.3474 | 0 | Isolated near basepair | X | LSU rRNA | U | 917 | A | 918 | U | 919 | * | A | 883 | C | 884 | A | 885 | cWW | cWW | |
| 4 | IL_2ZI0_001 | 2ZI0 | 0.3799 | 0 | Isolated near basepair | C+D | RNA (21-mer) | U | 9 | U | 10 | A | 11 | * | U | 9 | U | 10 | A | 11 | cWW | cWW | |
| 5 | IL_7Y2B_002 | 7Y2B | 0.3301 | 0 | Isolated non-canonical cWW contact | S | RNA (13-mer) | C | 6 | U | 7 | G | 8 | * | C | 6||||5_555 | U | 7||||5_555 | G | 8||||5_555 | cWW | cWW | |
| 6 | IL_4V88_406 | 4V88 | 0.2290 | 0 | Isolated near basepair | A6 | SSU rRNA | A | 420 | A | 421 | G | 422 | * | C | 411 | A | 412 | U | 413 | cWW | cWW | |
| 7 | IL_8C3A_414 | 8C3A | 0.1676 | 0 | Isolated non-canonical cWW pair | CM | SSU rRNA | A | 418 | A | 419 | G | 420 | * | C | 409 | A | 410 | U | 411 | cWW | cWW | |
| 8 | IL_3NJ7_003 | 3NJ7 | 0.1787 | 0 | Isolated near basepair | C+D | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 9 | IL_3NJ7_004 | 3NJ7 | 0.1766 | 0 | Isolated near basepair | D+C | RNA (10-mer) | C | 3 | A | 4 | G | 5 | * | C | 6 | A | 7 | G | 8 | cWW | cWW | |
| 10 | IL_4V9F_077 | 4V9F | 0.1577 | 0 | Isolated near basepair | 0 | LSU rRNA | G | 2237 | A | 2238 | C | 2239 | * | G | 2136 | A | 2137 | C | 2138 | cWW | ncWW | |
| 11 | IL_7VFT_004 | 7VFT | 0.0003 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 8 | A | 9 | G | 10 | * | C | 14||||12_555 | A | 15||||12_555 | G | 16||||12_555 | cWW | cWW | |
| 12 | IL_7VFT_002 | 7VFT | 0.0000 | 0 | Isolated non-canonical cWW pair | A | RNA (23-mer) | C | 8||||12_555 | A | 9||||12_555 | G | 10||||12_555 | * | C | 14 | A | 15 | G | 16 | cWW | cWW | |
| 13 | IL_5H1K_001 | 5H1K | 0.2045 | 0 | Isolated non-canonical cWW pair | C+D | U4 snRNA (13-mer) | G | 7 | A | 8 | C | 9 | * | G | 7 | A | 8 | C | 9 | cWW | cWW | |
| 14 | IL_1SI3_001 | 1SI3 | 0.2893 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 15 | IL_1SI2_002 | 1SI2 | 0.2641 | 0 | Isolated non-canonical cWW contact | B | RNA (9-mer) | U | 403 | G | 404 | A | 405 | * | U | 403||||4_675 | G | 404||||4_675 | A | 405||||4_675 | cWW | cWW | |
| 16 | IL_4V88_395 | 4V88 | 0.3051 | 0 | Isolated non-canonical cWW contact | A6 | SSU rRNA | A | 162 | G | 163 | A | 164 | * | U | 150 | G | 151 | U | 152 | cWW | cWW | |
| 17 | IL_5UNE_009 | 5UNE | 0.3683 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 7 | G | 8 | A | 9 | * | U | 39 | G | 40 | G | 41 | ncWW | cWW | |
| 18 | IL_5UNE_001 | 5UNE | 0.3119 | 0 | Isolated non-canonical cWW contact | B+A | RNA (47-MER) | U | 39 | G | 40 | G | 41 | * | U | 7 | G | 8 | A | 9 | cWW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAG*CAG | 6 |
| AAG*CAU | 2 |
| GAC*GAC | 2 |
| UGA*UGA | 2 |
| UAU*ACA | 1 |
| UUA*UUA | 1 |
| CUG*CUG | 1 |
| AGA*UGU | 1 |
| UGA*UGG | 1 |
| UGG*UGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*A | 10 |
| G*G | 5 |
| U*U | 2 |
| A*C | 1 |
Release history
| Release | 3.90 |
|---|---|
| Date | 2024-11-06 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW contact (8)
- Isolated near basepair (6)
- Isolated non-canonical cWW pair (4)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.00 | Avg 0.31 | Max 0.64
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