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Motif IL_77658.1 Version IL_77658.1 of this group appears in releases 3.95 to 3.98

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-62-73-64-5
1 IL_8P9A_4508P9A0.39900Tandem non-canonical cWW pairs (H)sR SSU rRNAC1495U1496U1497G1498*C1509U1510U1511G1512cWWcwWcWW
2 IL_7LYF_0017LYF0.31321Isolated cWH basepair with non-canonical cWWADengue virus SLAA90G91U93C94*G39U40C41U42cWWncHWncWwcWW
3 IL_8P9A_4118P9A0.29650Tandem non-canonical cWW pairs (H)sR SSU rRNAC726U727U728G729*C709U710U711G712ncWWcwWcWwcWW
4 IL_5C5W_0015C5W0.21850Tandem non-canonical cWW pairsARNA (19-mer)C15||||5_556U16||||5_556A17||||5_556G18||||5_556*C2C3U4G5cWWcwWcWWcWW
5 IL_402D_001402D0.30130Tandem non-canonical cWW pairsA+BRNA (8-mer)C103C104A105G106*C111C112A113G114cWWcWWcWWcWW
6 IL_8P9A_3808P9A0.26150Tandem non-canonical cWW pairs (H)sR SSU rRNAU302U303U304C305*G109U110U111A112cWWcwWcWwcWW
7 IL_8CRE_3978CRE0.25320Tandem non-canonical cWW pairs (H)CM SSU rRNAU300U301U302C303*G109U110U111A112cWWcwWcWwcWW
8 IL_8CRE_0448CRE0.266001 LSU rRNAU1037U1038C1039U1040*A1002U1003U1004A1005cWWcwWncWScWW
9 IL_8P9A_2698P9A0.24370Tandem non-canonical cWW pairs (H)AR LSU rRNAU1041U1042C1043U1044*A1006U1007U1008A1009cWWcwWcWW
10 IL_8P9A_4628P9A0.22610Tandem non-canonical cWW pairs (H)sR SSU rRNAC1675U1676C1677A1678*U1723U1724U1725G1726cWWcwWcWW
11 IL_8UIW_0028UIW0.22130Nazaaromatic riboswitch aptamer (yjdF RNA)G112U113C114G115*C100U101U102C103cWWcwWcWW
12 IL_8HNT_0018HNT0.24260Tandem non-canonical cWW pairsBsgRNAC32U33C34C35*G54U55U56G57cWWcwWncWScWW
13 IL_6JDV_0016JDV0.22210Tandem non-canonical cWW pairsBCRISPR RNA direct repeat elementC32U33C34C35*G66U67U68G69cWWcwWncWScWW
14 IL_4UYK_0034UYK0.14120Tandem non-canonical cWW pairsRSRP RNAG81U82U83C84*G117U118U119C120cWWcwWcWwcWW
15 IL_280D_001280D0.17220Tandem non-canonical cWW pairsB+ARNA (12-mer)C17U18U19G20*C5U6U7G8cWWcwWcWwcWW
16 IL_8CRE_1348CRE0.15520Tandem non-canonical cWW pairs (H)1 LSU rRNAU3214U3215U3216G3217*C3200U3201U3202A3203cWWcwWcWwcWW
17 IL_8P9A_3558P9A0.12870Tandem non-canonical cWW pairs (H)AR LSU rRNAC3235U3236U3237G3238*C3249U3250U3251G3252cWWcwWcWwcWW
18 IL_8CRE_0608CRE0.13160Tandem non-canonical cWW pairs (H)1 LSU rRNAA1339U1340U1341G1342*C1354U1355U1356U1357cWWcwWcWwcWW
19 IL_6MWN_0056MWN0.13450Tandem non-canonical cWW pairsB IRESA643U644U645G646*C661U662U663U664cWWcwWcWwcWW
20 IL_3R2D_0023R2D0.13010Tandem non-canonical cWW pairsS+RRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
21 IL_8ID2_0018ID20.00000Tandem non-canonical cWW pairsCRNA (24-mer)A5C6U7G8*C17U18U19U20cWWncWWcWWcWwcWW
22 IL_8CRE_4758CRE0.13580Tandem non-canonical cWW pairs (H)CM SSU rRNAG1710C1711U1712G1713*C1662U1663C1664C1665cWWncWwcWwcWW
23 IL_4EYA_0034EYA0.20550Tandem non-canonical cWW pairsf+eRNA (12-mer)C6U7U8G9*C6U7U8G9cWWcwWcWwcWW
24 IL_205D_001205D0.27080Tandem non-canonical cWW pairsA+BRNA (12-mer)U5U6U7G8*U17U18U19G20cWWcwWcWwcWW
25 IL_7A0S_0407A0S0.20630Tandem non-canonical cWW pairsX LSU rRNAA1175U1176U1177C1178*G1196U1197C1198U1199cWWcWWncWwcWW
26 IL_3TZR_0033TZR0.22150Tandem non-canonical cWW pairsA+BRNA (20-mer) + RNA (16-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
27 IL_2PN3_0042PN30.23750Tandem non-canonical cWW pairsA+BRNA (24-mer) + RNA (20-mer)C62U63U64C65*G102U103C104G105cWWcWWcWwcWW
28 IL_8P9A_3568P9A0.18320Tandem non-canonical cWW pairs (H)AR LSU rRNAU3300U3301U3302G3303*C3311U3312U3313A3314cWWcwWcWwcWW
29 IL_8CRE_1358CRE0.25780Tandem non-canonical cWW pairs (H)1 LSU rRNAC3276U3277U3278A3279*U3265U3266U3267G3268cWWcWwcWwcWW
30 IL_4XW0_0024XW00.29870Tandem non-canonical cWW pairsA+BRNA (10-mer)C2C3U4LCG5*C2C3U4LCG5cWWcWWcWWcWW
31 IL_4XW1_0024XW10.28690Tandem non-canonical cWW pairsCRNA (9-mer)C2||||7_555C3||||7_555U4||||7_555LCG5||||7_555*C2C3U4LCG5cWWcWWcWWcWW
32 IL_4K27_0034K270.37390Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC41C42U43G44*C12C13U14G15cWWcWWcWWcWW
33 IL_4K27_0024K270.40560Tandem non-canonical cWW pairsUMyotonic Dystrophy Type 2 RNAC45C46U47G48*C8C9U10G11cWWcWWcWWcWW
34 IL_8X5V_0018X5V0.29570Tandem non-canonical cWW pairsBRNA (110-mer)U28U29C30C31*G40U41U42G43cWWcwWcWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUG*CUUG6
UUUC*GUUA2
UUCU*AUUA2
CUCC*GUUG2
UUUG*CUUA2
AUUG*CUUU2
CUUC*GUCG2
CCU(LCG)*CCU(LCG)2
CCUG*CCUG2
AGUUC*GUCU1
CUAG*CCUG1
CCAG*CCAG1
CUCA*UUUG1
GUCG*CUUC1
GUUC*GUUC1
ACUG*CUUU1
GCUG*CUCC1
UUUG*UUUG1
AUUC*GUCU1
CUUA*UUUG1
UUCC*GUUG1
Non-Watson-Crick part of the motif
SequenceCounts
UU*UU15
UC*UU7
CU*CU4
UU*UC3
GUU*UC1
UA*CU1
CA*CA1
CU*UU1
CU*UC1

Release history

Release3.953.963.973.98
Date2025-03-262025-04-232025-05-212025-06-18
StatusNew id, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Tandem non-canonical cWW pairs (19)
  • Tandem non-canonical cWW pairs (H) (12)
  • (2)
  • Isolated cWH basepair with non-canonical cWW (1)
    • Basepair signature
    cWW-cWW-cWW-cWW
    Heat map statistics
    Min 0.05 | Avg 0.30 | Max 0.69
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