Motif IL_78349.3 Version IL_78349.3 of this group appears in releases 3.96 to 3.98
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 7-10 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4LFB_026 | 4LFB | 0.0000 | 0 | A | SSU rRNA | U | 605 | G | 606 | A | 607 | A | 608 | A | 609 | G | 610 | A | 611 | C | 612 | * | G | 628 | G | 629 | G | 630 | G | 631 | A | 632 | G | 633 | cWW | tSH | cWW | |
| 2 | IL_5J7L_030 | 5J7L | 0.4951 | 0 | AA | SSU rRNA | U | 605 | G | 606 | A | 607 | A | 608 | A | 609 | U | 610 | C | 611 | C | 612 | * | G | 628 | A | 629 | A | 630 | C | 631 | U | 632 | G | 633 | cWW | cWWa | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAAGAC*GGGGAG | 1 |
| UGAAAUCC*GAACUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAAGA*GGGA | 1 |
| GAAAUC*AACU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-L-L
- Heat map statistics
- Min 0.50 | Avg 0.25 | Max 0.50
Coloring options: