Motif IL_78732.1 Version IL_78732.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2GDI_004 | 2GDI | 0.0000 | 2 | cWH basepair and non-canonical AC | X | TPP riboswitch (THI element) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW |
| 2 | IL_3D2V_003 | 3D2V | 0.0799 | 2 | cWH basepair and non-canonical AC | A | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
| 3 | IL_2GDI_008 | 2GDI | 0.1329 | 2 | Y | TPP riboswitch (THI element) | U | 59 | G | 60 | A | 61 | C | 63 | * | G | 76 | C | 77 | G | 78 | A | 80 | cWW | cWH | cWW | |
| 4 | IL_3D2V_006 | 3D2V | 0.1640 | 2 | cWH basepair and non-canonical AC (H) | B | TPP riboswitch (THI element) | U | 47 | G | 48 | A | 49 | C | 51 | * | G | 64 | C | 65 | G | 66 | A | 68 | cWW | cWH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAUC*GCGUA | 2 |
| UGAAC*GCGCA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAU*CGU | 2 |
| GAA*CGC | 2 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_78732.1 | Only in the parent motif |
|---|---|---|---|
| IL_13862.1 Compare | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_011, IL_3BNQ_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_78732.1 | Only in the child motif |
|---|---|---|---|
| IL_78732.2 Compare | IL_2GDI_004, IL_3D2V_006, IL_2GDI_008, IL_3D2V_003 | IL_3BNP_003, IL_3BNP_002 |
- Annotations
-
- cWH basepair and non-canonical AC (2)
- (1)
- cWH basepair and non-canonical AC (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.04 | Avg 0.08 | Max 0.16
Coloring options: