Motif IL_78744.1 Version IL_78744.1 of this group appears in releases 0.6 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1DUH_003 | 1DUH | 0.0000 | 0 | A | 4.5S RNA DOMAIN IV | C | 52 | G | 53 | G | 54 | A | 55 | A | 56 | G | 57 | * | C | 52||||4_555 | G | 53||||4_555 | G | 54||||4_555 | A | 55||||4_555 | A | 56||||4_555 | G | 57||||4_555 | cWW | tSH | tSH | tHS | tHS | cWW | |
| 2 | IL_3FTF_001 | 3FTF | 0.1993 | 0 | Quadruple sheared | D+C | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | tSH | ntHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGGAAG*CGGAAG | 1 |
| GGGAAC*GGGAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GGAA | 2 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.17 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 | 2014-09-04 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_78744.1 | Only in the parent motif |
|---|---|---|---|
| IL_56237.1 Compare | IL_1DUH_003 | IL_3FTF_001 | |
| IL_49431.1 Compare | IL_3FTF_001 | IL_1DUH_003 |
Children motifs
| Child motif | Common motif instances | Only in IL_78744.1 | Only in the child motif |
|---|---|---|---|
| IL_78744.2 Compare | IL_3FTF_001, IL_1DUH_003 | IL_4A1B_037 |
- Annotations
-
- Quadruple sheared (1)
- Basepair signature
- cWW-tSH-tSH-tHS-tHS-cWW
- Heat map statistics
- Min 0.20 | Avg 0.10 | Max 0.20
Coloring options: