Motif IL_78800.2 Version IL_78800.2 of this group appears in releases 4.0 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-2 | 1-3 | 1-6 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_445 | 8P9A | 0.1276 | 2 | Minor groove platform (H) | sR | SSU rRNA | U | 1377 | U | 1378 | C | 1379 | U | 1380 | * | A | 1345 | A | 1348 | ncSH | cSH | cWW | cWW |
| 2 | IL_8CRE_481 | 8CRE | 0.0000 | 2 | CM | SSU rRNA | U | 1363 | U | 1364 | C | 1365 | U | 1366 | * | A | 1330 | A | 1333 | cSH | ncWW | cWW | ||
| 3 | IL_8GLP_266 | 8GLP | 0.1500 | 2 | S2 | SSU rRNA | U | 1441 | OMU | 1442 | C | 1443 | U | 1444 | * | A | 1402 | A | 1405 | cSH | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCU*AAUA | 2 |
| U(OMU)CU*ACUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*AU | 2 |
| (OMU)C*CU | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 |
|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Minor groove platform (H) (1)
- Basepair signature
- cWW-cSH-L-cWW
- Heat map statistics
- Min 0.13 | Avg 0.10 | Max 0.17
Coloring options: