IL_78918.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4		5	1-4	1-5	2-3
1	IL_1MWL_003	1MWL	0.0000	2		A+B	RNA (22-mer)	G	15	G	18\|\|A	*	C	28	A	29	C	30		cWW	cWW
2	IL_2QBG_010	2QBG	0.1114	0		B	23S rRNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
3	IL_3O58_058	3O58	0.2030	0		1	25S ribosomal RNA	G	1035	A	1036	*	U	1015	C	1016	C	1017		cWW	cWW
4	IL_3O58_107	3O58	0.2006	0		1	25S ribosomal RNA	G	2250	G	2251	*	C	2265	U	2266	C	2267		ncWW	cWW
5	IL_2ZJR_055	2ZJR	0.2745	0	Single stack bend (H)	X	LSU rRNA	C	1477	U	1478	*	A	1463	A	1464	G	1465		cWW	cWW
6	IL_2O3X_001	2O3X	0.2745	1	Stack and bulge	A+B	RNA (23-mer)	G	5	C	7	*	G	42	U	43	C	44		cWW	cWW
7	IL_3O58_156	3O58	0.3224	1		1	25S ribosomal RNA	C	3324	G	3325	*	U	3380	U	3381	G	3383		cWW	ncWW
8	IL_3O58_049	3O58	0.3601	0		1	25S ribosomal RNA	C	969	A	970	*	U	1111	A	1112	G	1113		cWW	cWW
9	IL_1MWL_002	1MWL	0.3115	2		B+A	RNA (22-mer)	G	37	G	40	*	C	6	A	7	C	8		cWW	cWW
10	IL_2QWY_008	2QWY	0.2674	0	Single stack bend	C	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW
11	IL_2ZJR_044	2ZJR	0.3190	1	Intercalated cWW (H)	X	LSU rRNA	U	1232	C	1234	*	G	1241	A	1242	G	1243		cWW	cWW
12	IL_3PYO_079	3PYO	0.3631	0		A	23S ribosomal RNA	A	2453	G	2454	*	C	2498	C	2499	U	2500		cWW	cWW
13	IL_3O58_147	3O58	0.8433	1		1	25S ribosomal RNA	G	3177	U	3179	*	A	3209	A	3210	C	3211		cWW	cWW
14	IL_2ZJR_005	2ZJR	0.6192	0	Single stack bend (H)	X	LSU rRNA	C	160	U	161	*	A	189	A	190	G	191		cWW	cWW
15	IL_2AW7_047	2AW7	0.6131	0		A	16S ribosomal RNA	C	998	C	999	*	G	1041	A	1042	G	1043		cWW	cWW
16	IL_1S72_005	1S72	0.6609	0	Single stack bend (H)	0	LSU rRNA	C	153	C	154	*	G	182	A	183	G	184		cWW	cWW
17	IL_3O58_004	3O58	0.6793	0		1	25S ribosomal RNA	C	27	C	28	*	G	56	A	57	G	58		cWW	cWW
18	IL_2QBG_084	2QBG	0.6367	1		B	23S rRNA	C	2103	U	2105	*	A	2184	U	2185	G	2186		cWW	cWW
19	IL_3O58_081	3O58	0.7010	0		1	25S ribosomal RNA	G	1825	C	1826	*	G	1618	A	1619	U	1620		ncWW	cWW
20	IL_3PYO_023	3PYO	0.7225	0		A	23S ribosomal RNA	C	837	C	838	*	G	940	A	941	G	942		cWW	cWW
21	IL_2QWY_002	2QWY	0.7606	0		A	SAM-II riboswitch	U	21	G	22	*	C	43	U	44	A	45		cWW	cWW
22	IL_3O58_149	3O58	0.6672	1		1	25S ribosomal RNA	U	3259	C	3261	*	G	3224	C	3225	A	3226	ncWW	cWW	cWW
23	IL_3PYO_005	3PYO	0.5564	0		A	23S ribosomal RNA	C	183	C	184	*	G	212	A	213	G	214		cWW	cWW
24	IL_3O58_023	3O58	0.4045	0		1	25S ribosomal RNA	U	623	G	624	*	C	435	A	436	G	437		cWW	cWW
25	IL_1O9M_001	1O9M	0.4969	1		A+B	EUBACTERIAL A-SITE	G	1405	C	1407	*	G	1494	U	1495	C	1496		cWW	cWW
26	IL_1S72_079	1S72	0.5488	0	Single stack bend (H)	0	LSU rRNA	C	2454	A	2455	*	U	2436	A	2437	G	2438		cWW	cWW
27	IL_1T0E_001	1T0E	0.8019	2	Decoding loop related	A+C	RNA (18-mer) + RNA (17-mer)	G	7	G	10\|\|A	*	C	16	A	17	C	18		cWW	cWW
28	IL_2ZJR_021	2ZJR	0.7788	0	Single stack bend (H)	X	LSU rRNA	C	850	C	851	*	G	951	A	952	G	953		cWW	cWW
29	IL_2O3X_002	2O3X	0.8164	2	Decoding loop related	B+A	RNA (23-mer)	G	39	G	42	*	C	7	A	8	C	9		cWW	cWW
30	IL_2QBG_027	2QBG	0.7410	0		B	23S rRNA	C	837	C	838	*	G	940	A	941	G	942		cWW	cWW
31	IL_2QBG_029	2QBG	0.8862	0		B	23S rRNA	U	850	C	851	*	G	926	A	927	A	928		cWW	cWW
32	IL_2AW7_024	2AW7	0.9444	0		A	16S ribosomal RNA	G	454	G	455	*	C	477	A	478	U	479		cWW	cWW
33	IL_1ZX7_007	1ZX7	0.8526	2		G+H	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
34	IL_3O58_010	3O58	0.7603	0		1	25S ribosomal RNA	G	256	U	257	*	A	164	A	165	C	166		cWW	cWW
35	IL_1DUH_001	1DUH	0.8166	4		A	4.5S RNA DOMAIN IV	U	38	G	43	*	C	66\|\|\|\|4_555	A	67\|\|\|\|4_555	A	68\|\|\|\|4_555		cWW	cWW
36	IL_3MOJ_004	3MOJ	0.7965	0	Single stack bend	A	LSU rRNA	U	2522	G	2523	*	C	2540	A	2541	A	2542		cWW	cWW
37	IL_2QBG_090	2QBG	0.8395	0		B	23S rRNA	A	2453	G	2454	*	C	2498	C	2499	U	2500		cWW	cWW
38	IL_1O9M_002	1O9M	0.8161	2		B+A	EUBACTERIAL A-SITE	G	1491	G	1494	*	C	1407	A	1408	C	1409		cWW	cWW
39	IL_3O58_036	3O58	0.8729	0		1	25S ribosomal RNA	C	752	C	753	*	G	779	A	780	G	781		cWW	cWW
40	IL_3O30_016	3O30	0.8592	0		1	18S ribosomal RNA	G	284	G	285	*	C	270	A	271	U	272		ncWW	cWW
41	IL_2XXA_013	2XXA	0.9483	0		G	SSRP RNA	G	28	C	29	*	G	68	A	69	U	70		cWW	cWW
42	IL_2O3X_003	2O3X	0.7931	2	Decoding loop related	A+B	RNA (23-mer)	G	16	G	19	*	C	30	A	31	C	32		cWW	cWW
43	IL_1DUH_005	1DUH	0.8050	4		A	4.5S RNA DOMAIN IV	U	38\|\|\|\|4_555	G	43\|\|\|\|4_555	*	C	66	A	67	A	68		cWW	cWW
44	IL_1ZX7_003	1ZX7	0.8440	2	Decoding loop related	C+D	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
45	IL_2ZJR_084	2ZJR	0.9358	0		X	LSU rRNA	A	2432	G	2433	*	C	2477	C	2478	U	2479		cWW	cWW
46	IL_3O58_153	3O58	0.8821	0		1	25S ribosomal RNA	A	3296	U	3297	*	A	3391	U	3392	U	3393	ncWW	cWW	ncWW
47	IL_2XXA_006	2XXA	0.9621	0		F	SSRP RNA	G	28	C	29	*	G	68	A	69	U	70	ncWW	cWW	cWW
48	IL_1FJG_046	1FJG	0.9654	0		A	SSU rRNA	G	1127	C	1128	*	G	1143	G	1144	C	1145		ncWW	cWW
49	IL_3O58_025	3O58	0.8663	0		1	25S ribosomal RNA	G	505	U	506	*	G	584	A	585	C	586		cWW	cWW
50	IL_1ZX7_005	1ZX7	0.8501	2	Decoding loop related	E+F	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW
51	IL_1ZX7_001	1ZX7	0.8337	2		A+B	RNA (15-mer) + RNA (14-mer)	G	7	G	10	*	C	26	A	27	C	28		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CC*GAG	9
GAAG*CAC	8
AG*CCU	3
GC*GAU	3
CAC*GAAG	2
CU*AAG	2
GUC*GUC	2
CA*UAG	2
UG*CUA	2
GG*CAU	2
GA*UCC	1
GG*CUC	1
CG*UUUG	1
UAC*GAG	1
GAU*AAC	1
CCU*AUG	1
GCA*UGC	1
UG*CAG	1
UC*GAA	1
GU*AAC	1
UACCAG*CAA	1
UG*CAA	1
CAA*UACCAG	1
AU*AUU	1
GC*GGC	1
GU*GAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
*A	23
AA*A	8
*C	4
*U	4
A*AA	2
U*U	2
A*A	2
*UU	1
C*U	1
C*G	1
ACCA*A	1
A*ACCA	1
*G	1

Release history

Release	0.5
Date	2011-12-08
Status	New id, 2 parents

Parent motifs

Parent motif	Common motif instances	Only in IL_78918.1	Only in the parent motif
IL_11363.2 Compare	IL_2ZJR_055, IL_2QWY_008, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_1S72_005, IL_2ZJR_084, IL_2ZJR_044, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_1ZX7_003, IL_3MOJ_004, IL_1ZX7_001, IL_1S72_079, IL_1T0E_001, IL_2O3X_001, IL_2O3X_002, IL_2O3X_003	IL_3O58_049, IL_2QBG_084, IL_3O58_081, IL_1DUH_005, IL_3O58_149, IL_3O58_107, IL_3O58_023, IL_3O58_004, IL_3O58_025, IL_3O58_147, IL_2QBG_027, IL_1DUH_001, IL_2QBG_029, IL_2XXA_006, IL_2QBG_090, IL_3O58_058, IL_3PYO_079, IL_3O30_016, IL_2AW7_047, IL_3O58_010, IL_3O58_153, IL_2QBG_010, IL_3O58_156, IL_3O58_036, IL_2AW7_024, IL_3PYO_005, IL_2XXA_013, IL_3PYO_023	IL_3F1H_023, IL_3F1H_005, IL_3F1H_088, IL_3G78_012, IL_1FJG_012, IL_2QWY_005, IL_1FJG_057
IL_64838.1 Compare	IL_1DUH_001, IL_1DUH_005	IL_3O58_049, IL_2QBG_084, IL_3O58_081, IL_2ZJR_055, IL_3O58_149, IL_3O58_107, IL_2QWY_008, IL_3O58_023, IL_3O58_004, IL_1O9M_002, IL_2QWY_002, IL_3O58_025, IL_3O58_147, IL_2QBG_027, IL_2QBG_029, IL_1S72_005, IL_2O3X_001, IL_2ZJR_084, IL_1FJG_046, IL_3PYO_079, IL_1O9M_001, IL_2XXA_006, IL_2ZJR_044, IL_2QBG_090, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_3O58_058, IL_1ZX7_007, IL_3O30_016, IL_1ZX7_005, IL_2O3X_002, IL_2ZJR_005, IL_2AW7_047, IL_1ZX7_003, IL_3O58_010, IL_3MOJ_004, IL_1S72_079, IL_3O58_153, IL_2QBG_010, IL_1ZX7_001, IL_3O58_156, IL_3O58_036, IL_2O3X_003, IL_2AW7_024, IL_1T0E_001, IL_3PYO_005, IL_2XXA_013, IL_3PYO_023

Children motifs

Child motif	Common motif instances	Only in IL_78918.1	Only in the child motif
IL_56465.1 Compare	IL_2QBG_084, IL_2ZJR_055, IL_1DUH_005, IL_2QWY_008, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_2QBG_027, IL_1DUH_001, IL_2QBG_029, IL_1S72_005, IL_2ZJR_084, IL_2O3X_003, IL_2ZJR_044, IL_2QBG_090, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_1ZX7_007, IL_1ZX7_005, IL_2ZJR_005, IL_2AW7_047, IL_1ZX7_003, IL_3MOJ_004, IL_1S72_079, IL_2QBG_010, IL_1ZX7_001, IL_2O3X_001, IL_2O3X_002, IL_2AW7_024, IL_1T0E_001	IL_3O58_049, IL_2XXA_013, IL_3O58_081, IL_3O58_058, IL_3PYO_079, IL_3O30_016, IL_2XXA_006, IL_3O58_149, IL_3O58_010, IL_3O58_107, IL_3PYO_005, IL_3O58_025, IL_3O58_023, IL_3O58_004, IL_3O58_153, IL_3PYO_023, IL_3O58_156, IL_3O58_036, IL_3O58_147	IL_3UXR_005, IL_3TD1_002, IL_4A1B_001, IL_3U5H_037, IL_3UXR_024, IL_3T4B_001, IL_3TD1_005, IL_4A1B_073, IL_3U5H_009, IL_3UXR_089, IL_4A1B_042, IL_3U5H_004, IL_3U5H_146, IL_4A1B_009, IL_2AW7_025, IL_4A1B_018
IL_94430.1 Compare	IL_2XXA_013, IL_2XXA_006	IL_3O58_049, IL_2QBG_084, IL_3O58_081, IL_2ZJR_055, IL_1DUH_005, IL_3O58_149, IL_3O58_107, IL_2QWY_008, IL_3O58_023, IL_3O58_004, IL_1O9M_002, IL_2QWY_002, IL_1FJG_046, IL_1O9M_001, IL_2QBG_027, IL_1DUH_001, IL_2QBG_029, IL_1S72_005, IL_2O3X_001, IL_2ZJR_084, IL_3O58_025, IL_1ZX7_007, IL_3O58_147, IL_2ZJR_044, IL_2QBG_090, IL_2ZJR_021, IL_1MWL_003, IL_1MWL_002, IL_3O58_058, IL_3PYO_079, IL_3O30_016, IL_1ZX7_005, IL_2O3X_002, IL_2ZJR_005, IL_2AW7_047, IL_1ZX7_003, IL_3O58_010, IL_3MOJ_004, IL_1S72_079, IL_3O58_153, IL_2QBG_010, IL_1ZX7_001, IL_3O58_156, IL_3O58_036, IL_2O3X_003, IL_2AW7_024, IL_1T0E_001, IL_3PYO_005, IL_3PYO_023	IL_2QBG_072, IL_3UXR_032, IL_2AW7_046, IL_3UXR_055, IL_2ZJR_105, IL_3Q1Q_003, IL_3UXR_068, IL_2ZJR_067, IL_4A1B_086, IL_1S72_066, IL_2AW7_007, IL_3U5H_145

Motif IL_78918.1 Version IL_78918.1 of this group appears in releases 0.5 to 0.5 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_78918.1 Version IL_78918.1 of this group appears in releases 0.5 to 0.5

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