#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 101-102-93-84-75-6
1 IL_1S72_0831S720.14220Triple sheared (H)0 LSU rRNAC2515G2516A2517C2518C2519*G2501C2502A2503A2504G2505cWWtSHntHScBWcWW
2 IL_1S72_0281S720.000000 LSU rRNAU794G795A796A797G798*U815G816G817A818A819cWWtSHtHStHScWW
3 IL_3F1H_0723F1H0.36330A23S RRNAC1882G1883A1884A1885C1886*G1856G1857G1858A1859G1860cWWtSHntHStHScWW
4 IL_3F1H_0203F1H0.49230A23S RRNAU703G704A705A706G707*U724G725G726A727G728cWWntSHtHStHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGACC*GCAAG1
UGAAG*UGGAA1
GGGAG*CGAAC1
UGAAG*UGGAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*GGA2
GAC*CAA1
GGA*GAA1

Release history

Release0.3
Date2011-12-08
StatusNew id, 2 parents

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_79318.1Only in the child motif
IL_72638.1
Compare
IL_1S72_028, IL_3F1H_020, IL_3F1H_072IL_1S72_083IL_3F1H_026, IL_3MUR_002
IL_20844.1
Compare
IL_1S72_083IL_1S72_028, IL_3F1H_020, IL_3F1H_072IL_3F1H_099, IL_2ZJR_094
Annotations
  • (3)
  • Triple sheared (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.14 | Avg 0.28 | Max 0.51
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