Motif IL_79318.1 Version IL_79318.1 of this group appears in releases 0.3 to 0.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_083 | 1S72 | 0.1422 | 0 | Double sheared with non-canonical cWW (H) | 0 | LSU rRNA | C | 2515 | G | 2516 | A | 2517 | C | 2518 | C | 2519 | * | G | 2501 | C | 2502 | A | 2503 | A | 2504 | G | 2505 | cWW | tSH | ntHS | cBW | cWW |
| 2 | IL_1S72_028 | 1S72 | 0.0000 | 0 | 0 | LSU rRNA | U | 794 | G | 795 | A | 796 | A | 797 | G | 798 | * | U | 815 | G | 816 | G | 817 | A | 818 | A | 819 | cWW | tSH | tHS | tHS | cWW | |
| 3 | IL_3F1H_072 | 3F1H | 0.3633 | 0 | A | LSU rRNA | C | 1882 | G | 1883 | A | 1884 | A | 1885 | C | 1886 | * | G | 1856 | G | 1857 | G | 1858 | A | 1859 | G | 1860 | cWW | tSH | ntHS | tHS | cWW | |
| 4 | IL_3F1H_020 | 3F1H | 0.4923 | 0 | A | LSU rRNA | U | 703 | G | 704 | A | 705 | A | 706 | G | 707 | * | U | 724 | G | 725 | G | 726 | A | 727 | G | 728 | cWW | ntSH | tHS | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGACC*GCAAG | 1 |
| UGAAG*UGGAA | 1 |
| CGAAC*GGGAG | 1 |
| UGAAG*UGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*GGA | 3 |
| GAC*CAA | 1 |
Release history
| Release | 0.3 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79318.1 | Only in the parent motif |
|---|---|---|---|
| IL_16628.1 Compare | IL_1S72_083, IL_3F1H_020, IL_3F1H_072 | IL_1S72_028 | IL_1S72_089, IL_3F1H_099, IL_2ZJR_094 |
| IL_98916.1 Compare | IL_1S72_028 | IL_1S72_083, IL_3F1H_020, IL_3F1H_072 |
Children motifs
| Child motif | Common motif instances | Only in IL_79318.1 | Only in the child motif |
|---|---|---|---|
| IL_72638.1 Compare | IL_1S72_028, IL_3F1H_020, IL_3F1H_072 | IL_1S72_083 | IL_3F1H_026, IL_3MUR_002 |
| IL_20844.1 Compare | IL_1S72_083 | IL_1S72_028, IL_3F1H_020, IL_3F1H_072 | IL_3F1H_099, IL_2ZJR_094 |
- Annotations
-
- (3)
- Double sheared with non-canonical cWW (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.14 | Avg 0.28 | Max 0.51
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