Motif IL_79955.2 Version IL_79955.2 of this group appears in releases 0.6 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_030 | 1FJG | 0.0995 | 0 | A | SSU rRNA | G | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | C | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | |
| 2 | IL_2AW7_037 | 2AW7 | 0.0000 | 0 | A | 16S ribosomal RNA | A | 673 | G | 674 | A | 675 | A | 676 | U | 677 | U | 678 | * | A | 712 | G | 713 | G | 714 | A | 715 | A | 716 | U | 717 | cWW | cWW | ncWw | cWW | ncWWa | cWW | |
| 3 | IL_4A1B_025 | 4A1B | 0.5368 | 2 | 1 | 26S RRNA | G | 562 | G | 563 | U | 566 | C | 567 | A | 568 | C | 569 | * | G | 600 | A | 601 | A | 602 | A | 603 | A | 604 | C | 605 | cWW | cWW | ncBW | ncWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAAUU*AGGAAC | 1 |
| AGAAUU*AGGAAU | 1 |
| GGAGUCAC*GAAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAU*GGAA | 2 |
| GAGUCA*AAAA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-20 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_79955.2 | Only in the parent motif |
|---|---|---|---|
| IL_79955.1 Compare | IL_1FJG_030, IL_2AW7_037 | IL_4A1B_025 |
Children motifs
| Child motif | Common motif instances | Only in IL_79955.2 | Only in the child motif |
|---|---|---|---|
| IL_31772.1 Compare | IL_1FJG_030, IL_2AW7_037 | IL_4A1B_025 | IL_1VX2_037, IL_1VX6_012, IL_4FAW_007, IL_1D4R_002 |
| IL_44977.1 Compare | IL_4A1B_025 | IL_1FJG_030, IL_2AW7_037 | IL_3U5F_038 |
- Annotations
- Basepair signature
- cWW-cWW-cWW-cWW-cSW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.27 | Max 0.58
Coloring options: