IL_80007.16

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_7RQB_111	7RQB	0.6779	1	Major groove intercalation	1B	5S rRNA	C	65	G	67	*	C	17	G	18	cWW	cWW
2	IL_5J7L_302	5J7L	0.6287	1	Single bulged A	DA	LSU rRNA	C	1489	G	1491	*	C	1499	G	1500	cWW	cWW
3	IL_5TBW_060	5TBW	0.5056	1	Single bulged A	1	LSU rRNA	U	1398	G	1400	*	C	1411	G	1412	cWW	cWW
4	IL_7RQB_033	7RQB	0.3900	1	Single bulged A	1A	LSU rRNA	U	895	C	897	*	G	880	G	881	cWW	cWW
5	IL_4PHY_004	4PHY	0.3499	1	Single bulged A	A+B	RNA (26-MER) + RNA (20-mer)	C	20	C	22	*	G	30	G	31	ncWW	cWW
6	IL_2QUX_002	2QUX	0.3535	1	Single bulged A	F	RNA (25-MER)	C	5	G	7	*	C	20	G	21	cWW	cWW
7	IL_5TBW_113	5TBW	0.2706	1	Single bulged A	1	LSU rRNA	C	2970	G	2972	*	C	2960	G	2961	cWW	cWW
8	IL_5J7L_344	5J7L	0.2389	1	Single bulged A	DA	LSU rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
9	IL_7RQB_101	7RQB	0.2338	1	Single bulged A	1A	LSU rRNA	C	2601	G	2603	*	C	2591	G	2592	cWW	cWW
10	IL_4PHY_002	4PHY	0.3835	1	Single bulged A	B+A	RNA (20-mer)	G	38	G	40	*	C	12	C	13	cWW	cWW
11	IL_4P43_003	4P43	0.2343	1	Single bulged A	A+B	RNA (23-mer)	A	17	G	19	*	C	30	U	31	cWW	cWW
12	IL_4P43_002	4P43	0.2488	1	Single bulged A	B+A	RNA (23-mer)	A	40	G	42	*	C	7	U	8	cWW	cWW
13	IL_5FJC_001	5FJC	0.2807	1	Single bulged A	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
14	IL_5J7L_002	5J7L	0.2288	1	Single bulged A	AA	SSU rRNA	C	396	U	398	*	A	44	G	45	cWW	cWW
15	IL_5TBW_098	5TBW	0.2185	1	Single bulged A	1	LSU rRNA	C	2625	C	2627	*	G	2614	G	2615	cWW	cWW
16	IL_4AOB_001	4AOB	0.2742	1	Single bulged A	A	SAM-I riboswitch	G	13	G	15	*	C	40	C	41	cWW	cWW
17	IL_1U63_004	1U63	0.2534	1	Single bulged A	D	49 NT FRAGMENT OF MRNA FOR L1	G	28	A	30	*	U	16	C	17	cWW	cWW
18	IL_1JZV_002	1JZV	0.2812	1	Single bulged A	B+A	RNA (9-mer)	U	12	C	14	*	G	4	A	5	cWW	cWW
19	IL_4R4V_004	4R4V	0.4039	1	Single bulged A	A	VS ribozyme RNA	U	712	G	714	*	C	660	A	661	cWW	cWW
20	IL_3MJA_001	3MJA	0.3223	1	Single bulged A	B	Domain 3 of the cricket paralysis virus intergenic region IRES RNA	C	6194	G	6195	*	C	6181	G	6183	cWW	cWW
21	IL_5TBW_024	5TBW	0.3152	1	Single bulged A	1	LSU rRNA	G	779	G	781	*	C	752	C	753	cWW	cWW
22	IL_6MSF_001	6MSF	0.2994	1	Single bulged A	R	RNA (14-mer)	G	12\|\|\|\|P_1	G	13\|\|\|\|P_1	*	C	2\|\|\|\|P_1	C	4\|\|\|\|P_1	cWW	cWW
23	IL_4LGT_002	4LGT	0.3174	1	Single bulged A	E	stem-loop of 23S rRNA	C	2591	G	2592	*	C	2601	G	2603	cWW	cWW
24	IL_7KGA_002	7KGA	0.2703	1	Single bulged A	A	Flavivirus DB element	C	14	A	15	*	U	39	G	41	cWW	cWW
25	IL_6D3P_004	6D3P	0.1800	1	Single bulged A	A	RNA (45-MER)	C	12	C	13	*	G	27	G	29	cWW	cWW
26	IL_2C4Q_001	2C4Q	0.1909	1	Single bulged A	R	RNA (19-mer)	C	14\|\|\|\|P_1	C	15\|\|\|\|P_1	*	G	5\|\|\|\|P_1	G	7\|\|\|\|P_1	cWW	cWW
27	IL_1I9X_002	1I9X	0.1756	1	Single bulged A	B+A	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
28	IL_1I9X_001	1I9X	0.2433	1	Single bulged A	A+B	RNA (13-mer)	U	4	A	6	*	U	9	A	10	cWW	cWW
29	IL_4P3U_011	4P3U	0.1584	1	Single bulged A	C+D	RNA (23-mer)	A	17	G	19	*	C	30	U	31	cWW	cWW
30	IL_6WPI_001	6WPI	0.1031	1	Single bulged A	B	RNA (47-MER)	G	11	A	13	*	U	41	C	42	cWW	cWW
31	IL_4P3U_005	4P3U	0.0000	1	Single bulged A	B+A	RNA (23-mer)	C	30	U	31	*	A	17	G	19	cWW	cWW
32	IL_4P3U_008	4P3U	0.1679	1	Single bulged A	C+D	RNA (23-mer)	C	7	U	8	*	A	40	G	42	cWW	cWW
33	IL_5TBW_372	5TBW	0.1638	1	Single bulged A	AS	5S rRNA	C	15	U	16	*	A	63	G	65	cWW	cWW
34	IL_4P3U_002	4P3U	0.2367	1	Single bulged A	B+A	RNA (23-mer)	A	40	G	42	*	C	7	U	8	ncWW	cWW
35	IL_4V9F_079	4V9F	0.3323	1	Single bulged A	0	LSU rRNA	G	2279	A	2280	*	U	2290	C	2292	cWW	cWW
36	IL_5AOX_002	5AOX	0.3411	1	Single bulged A	C	ALU JO CONSENSUS RNA	C	108	C	109	*	G	56	G	58	cWW	cWW
37	IL_4V9F_090	4V9F	0.3235	1	Single bulged A	0	LSU rRNA	C	2626	G	2627	*	C	2636	G	2638	cWW	cWW
38	IL_4V9F_064	4V9F	0.4041	1	Single bulged A	0	LSU rRNA	C	1826	G	1827	*	C	2021	G	2023	cWW	cWW
39	IL_4V88_452	4V88	0.3548	1	Single bulged A	A6	SSU rRNA	C	1280	G	1281	*	C	1426	G	1428	cWW	cWW
40	IL_4WF9_006	4WF9	0.4237	1	Single bulged A	X	LSU rRNA	C	152	G	153	*	C	175	G	177	cWW	cWW
41	IL_4R4V_003	4R4V	0.4097	1	Single bulged A	A	VS ribozyme RNA	C	651	G	653	*	C	766	G	767	cWW	cWW
42	IL_1MFQ_005	1MFQ	0.4763	1	Single bulged A	A	SRP RNA	G	175	G	177	*	C	220	C	221	cWW	cWW
43	IL_5J7L_049	5J7L	0.3986	1	Single bulged A	AA	SSU rRNA	U	1060	G	1061	*	C	1195	A	1197	cWW	cWW
44	IL_5TBW_058	5TBW	0.5995	1	Single bulged A	1	LSU rRNA	C	1420	G	1421	*	C	1385	G	1387	cWW	cWW
45	IL_6CYT_001	6CYT	0.4246	1	Single bulged A	N	RNA (17-mer)	G	34	G	36	*	C	29	C	30	cWW	cWW
46	IL_3V7E_001	3V7E	0.3162	1	Single bulged A	C	SAM-I riboswitch	C	40	C	41	*	G	13	G	15	cWW	cWW
47	IL_3OXE_001	3OXE	0.3712	1	Single bulged A	A	domain II of glycine riboswitch	U	27	C	28	*	G	12	A	14	cWW	cWW
48	IL_7RQB_019	7RQB	0.2557	1	Single bulged A	1A	LSU rRNA	C	697	C	698	*	G	763	G	765	cWW	cWW
49	IL_7A0S_016	7A0S	0.2641	1	Single bulged A	X	LSU rRNA	C	710	C	711	*	G	776	G	778	cWW	cWW
50	IL_7RQB_059	7RQB	0.3404	1	Single bulged A	1A	LSU rRNA	C	1450\|\|\|A	C	1451	*	G	1459	G	1461	cWW	cWW
51	IL_4WF9_022	4WF9	0.3555	1	Single bulged A	X	LSU rRNA	U	742	C	743	*	G	808	A	810	cWW	cWW
52	IL_5TBW_082	5TBW	0.3234	1	Single bulged A	1	LSU rRNA	G	2323	G	2325	*	C	2128	U	2129	cWW	cWW
53	IL_2VPL_002	2VPL	0.1980	1	Single bulged A	B	FRAGMENT OF MRNA FOR L1-OPERON CONTAINING REGULATOR L1-BINDING SITE	G	28	A	30	*	U	16	C	17	cWW	cWW
54	IL_5J7L_246	5J7L	0.1924	1	Single bulged A	DA	LSU rRNA	G	442	C	444	*	G	36	C	37	cWW	cWW
55	IL_7RQB_002	7RQB	0.2130	1	Single bulged A	1A	LSU rRNA	G	442	C	444	*	G	36	C	37	cWW	cWW
56	IL_7A0S_002	7A0S	0.2112	1	Single bulged A	X	LSU rRNA	G	454	C	456	*	G	36	C	37	cWW	cWW
57	IL_1NBS_005	1NBS	0.2261	1	Single bulged A	B	RNase P class B	G	129	C	131	*	G	113	C	114	cWW	cWW
58	IL_7A0S_012	7A0S	0.2970	1	Single bulged A	X	LSU rRNA	G	600	C	602	*	G	678	C	679	cWW	cWW
59	IL_7A0S_064	7A0S	0.4230	1	Single bulged A	X	LSU rRNA	G	1963	U	1965	*	G	1761	C	1762	cWW	cWW
60	IL_5J7L_312	5J7L	0.4272	1	Single bulged A	DA	LSU rRNA	G	1980	U	1982	*	G	1770	C	1771	cWW	cWW
61	IL_5J7L_261	5J7L	0.5015	1	Single bulged A	DA	LSU rRNA	G	697	C	698	*	G	763	C	765	cWW	cWW
62	IL_4V9F_025	4V9F	0.5089	1	Single bulged A	0	LSU rRNA	A	788	C	789	*	G	856	U	858	cWW	cWW
63	IL_1U9S_001	1U9S	0.3367	1	Single bulged A	A	RIBONUCLEASE P	G	107	C	109	*	G	95	C	96	cWW	cWW
64	IL_1CSL_002	1CSL	0.3183	1	Single bulged A	B+A	RNA (15-mer)	G	67	C	69	*	G	50	C	51	cWW	cWW
65	IL_1DUQ_002	1DUQ	0.2975	1	Single bulged A	B+A	THE REV BINDING ELEMENT	G	120	C	122	*	G	108	C	109	cWW	cWW
66	IL_5TBW_123	5TBW	0.2779	1	Single bulged A	1	LSU rRNA	G	3177	U	3179	*	A	3210	C	3211	cWW	cWW
67	IL_7RQB_048	7RQB	0.3786	1	Single bulged A	1A	LSU rRNA	G	1219	C	1221	*	G	1229	C	1230	cWW	cWW
68	IL_7RQB_069	7RQB	0.3964	1	Single bulged A	1A	LSU rRNA	G	1980	C	1982	*	G	1770	C	1771	cWW	cWW
69	IL_4LFB_002	4LFB	0.4178	1	Single bulged A	A	SSU rRNA	G	396	C	398	*	G	44	U	45	cWW	cWW
70	IL_5TBW_013	5TBW	0.4151	1	Single bulged A	1+4	LSU rRNA + 5.8S rRNA	G	337	C	339	*	G	25	U	26	cWW	cWW
71	IL_6CZR_114	6CZR	0.5456	1	Single bulged A	1a	SSU rRNA	G	392	C	394	*	G	45	U	46	cWW	cWW
72	IL_5TBW_045	5TBW	0.4170	1	Single bulged A	1	LSU rRNA	U	1074	C	1076	*	G	1083	A	1084	cWW	cWW
73	IL_4LFB_035	4LFB	0.4195	1	Single bulged A	A	SSU rRNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
74	IL_5J7L_039	5J7L	0.3959	1	Single bulged A	AA	SSU rRNA	U	1393	C	1395	*	G	922	A	923	cWW	cWW
75	IL_6CZR_147	6CZR	0.4607	1	Single bulged A	1a	SSU rRNA	U	1376	C	1378	*	G	900	A	901	cWW	cWW
76	IL_7KGA_005	7KGA	0.4269	1	Single bulged A	B	Flavivirus DB element	U	39	G	41	*	C	14	A	15	cWW	cWW
77	IL_5WWT_001	5WWT	0.3291	1	Single bulged A	C	tRNA	G	37	U	39	*	A	31	C	32	cWW	cWW
78	IL_4WF9_068	4WF9	0.4396	1	Single bulged A	X	LSU rRNA	G	1797	C	1798	*	G	2007	U	2009	cWW	cWW
79	IL_4WF9_002	4WF9	0.3150	1	Single bulged A	X	LSU rRNA	G	36	C	37	*	G	488	C	490	cWW	cWW
80	IL_4V88_409	4V88	0.4070	1	Single bulged A	A6	SSU rRNA	A	481	U	482	*	A	505	U	507	cWW	cWW
81	IL_4V9F_002	4V9F	0.3973	1	Single bulged A	0	LSU rRNA	G	33	C	34	*	G	448	C	450	cWW	cWW
82	IL_4V88_399	4V88	0.4323	1	Single bulged A	A6	SSU rRNA	A	288	U	289	*	A	265	U	267	cWW	cWW
83	IL_4V88_441	4V88	0.5252	1	Single bulged A	A6	SSU rRNA	G	1146	A	1147	*	U	1630	C	1632	cWW	cWW
84	IL_4V9F_098	4V9F	0.5732	1	Single bulged A	0	LSU rRNA	G	2860	G	2861	*	C	2895	C	2897	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAC*GC	10
CAG*CG	7
CG*CAG	7
CC*GAG	7
GAG*CC	6
UAC*GA	5
AAG*CU	4
GAA*UC	3
CU*AAG	3
GC*GAC	3
GAC*GU	3
CAC*GG	2
UAG*CA	2
GG*CAC	2
UAA*UA	2
GA*UAC	2
UC*GAA	2
GAU*GC	2
GAU*AC	2
AU*AAU	2
UAG*CG	1
UAC*GG	1
CAU*AG	1
CA*UAG	1
UG*CAA	1
GAG*CU	1
AC*GAU	1
GC*GAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*	52
*A	32

Release history

Release	3.62	3.63	3.64	3.65	3.66	3.67	3.68	3.69	3.70	3.71	3.72	3.73	3.74	3.75	3.76
Date	2022-10-12	2022-11-09	2022-12-07	2023-01-04	2023-02-01	2023-03-01	2023-03-29	2023-04-26	2023-05-24	2023-06-21	2023-07-19	2023-08-16	2023-09-13	2023-10-11	2023-11-08
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_80007.16 Version IL_80007.16 of this group appears in releases 3.62 to 3.76 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_80007.16 Version IL_80007.16 of this group appears in releases 3.62 to 3.76

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Csv

Json