Motif IL_80231.1 Version IL_80231.1 of this group appears in releases 3.89 to 3.99
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5J7L_063 | 5J7L | 0.0000 | 0 | Triple sheared related | AA | SSU rRNA | A | 1430 | A | 1431 | G | 1432 | A | 1433 | A | 1434 | G | 1435 | * | C | 1466 | C | 1467 | A | 1468 | C | 1469 | U | 1470 | cWW | tSH | tSH | ntHS | cWW | |
| 2 | IL_5XTM_002 | 5XTM | 0.7856 | 1 | Other IL | B | RNA (47-MER) | G | 8 | A | 9 | U | 10 | G | 11 | A | 12 | A | 14 | * | U | 35 | A | 36 | A | 37 | C | 38 | C | 39 | cWW | ncWWa | tSH | cBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAGAAG*CCACU | 1 |
| GAUGAAA*UAACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGAA*CAC | 1 |
| AUGAA*AAC | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 | 3.98 | 3.99 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 | 2025-06-18 | 2025-07-16 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Triple sheared related (1)
- Other IL (1)
- Basepair signature
- cWW-L-R-L-R-L-R-tHS-cWW
- Heat map statistics
- Min 0.79 | Avg 0.39 | Max 0.79
Coloring options: