Motif IL_80348.1 Version IL_80348.1 of this group appears in releases 1.1 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-5 | 2-3 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1FJG_012 | 1FJG | 0.3920 | 1 | A | SSU rRNA | A | 274 | G | 275 | * | U | 249 | A | 250 | U | 252 | cWW | cWW |
| 2 | IL_3U5F_020 | 3U5F | 0.0000 | 3 | 6 | 18S rRNA | U | 345 | G | 346 | * | U | 318 | U | 319 | A | 323 | cWW | cWW |
| 3 | IL_4IOA_023 | 4IOA | 0.6840 | 0 | X | LSU rRNA | U | 860 | G | 861 | * | U | 942 | U | 943 | A | 944 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AG*UAGU | 1 |
| UG*UUUCGA | 1 |
| UG*UUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AG | 1 |
| *UUCG | 1 |
| *U | 1 |
Release history
| Release | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|
| Date | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80348.1 | Only in the parent motif |
|---|---|---|---|
| IL_87218.1 Compare | IL_3U5F_020, IL_1FJG_012 | IL_4IOA_023 | IL_2ZJR_023, IL_4A1B_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_80348.1 | Only in the child motif |
|---|---|---|---|
| IL_80348.2 Compare | IL_4IOA_023, IL_3U5F_020 | IL_1FJG_012 | |
| IL_96206.2 Compare | IL_1FJG_012 | IL_4IOA_023, IL_3U5F_020 | IL_1S72_017, IL_1XJR_004 |
- Annotations
-
- (3)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.39 | Avg 0.42 | Max 0.82
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