Motif IL_80494.4 Version IL_80494.4 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 4-9 | 5-8 | 6-7 | 9-10 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_068 | 1VWW | 0.6971 | 21 | 5 | LSU rRNA | U | 1792 | A | 1793 | A | 1794 | A | 1795 | U | 1796 | G | 1797 | * | C | 1732 | G | 1733 | G | 1734 | U | 1735 | A | 1736 | A | 1737 | cWW | ntSH | cWW | cSH | ||
| 2 | IL_3P49_012 | 3P49 | 0.0000 | 1 | A | Glycine riboswitch | G | 116 | C | 117 | A | 118 | A | 119 | A | 120 | G | 121 | * | C | 132 | C | 133 | U | 134 | A | 135 | A | 136 | C | 138 | cWW | tWH | ncWW | cWW | ||
| 3 | IL_1S72_057 | 1S72 | 0.2977 | 1 | 0 | LSU rRNA | C | 1578 | C | 1579 | A | 1580 | A | 1581 | C | 1582 | U | 1583 | * | A | 1612 | C | 1613 | G | 1614 | A | 1615 | A | 1616 | G | 1618 | cWW | ntWH | tHS | ncBW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGCGCCCUGGAAUGGG*CCCGAGAGAGGGGCCC | 1 |
| GCAAAG*CCUAAAC | 1 |
| CCAACU*ACGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGCGCCCUGGAAUGG*CCGAGAGAGGGGCC | 1 |
| CAAA*CUAAA | 1 |
| CAAC*CGAAC | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_80494.4 | Only in the parent motif |
|---|---|---|---|
| IL_80494.3 Compare | IL_3P49_012, IL_1S72_057 | IL_1VWW_068 |
Children motifs
| Child motif | Common motif instances | Only in IL_80494.4 | Only in the child motif |
|---|---|---|---|
| IL_80494.5 Compare | IL_3P49_012, IL_1S72_057 | IL_1VWW_068 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tWH-L-R-tHS-bif-cWW
- Heat map statistics
- Min 0.30 | Avg 0.40 | Max 0.79
Coloring options: