Motif IL_81326.2 Version IL_81326.2 of this group appears in releases 3.44 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2O3V_002 | 2O3V | 0.9386 | 2 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW | ||
| 2 | IL_2O3Y_002 | 2O3Y | 0.9068 | 2 | Decoding loop related | A+B | RNA (23-mer) | C | 7 | G | 8 | C | 9 | U | 10 | * | A | 38 | A | 39 | G | 42 | cWW | cWWa | cWW | ||
| 3 | IL_4QIK_001 | 4QIK | 0.9589 | 0 | D+C | RNA (23-mer) | U | 11 | G | 12 | U | 13 | G | 14 | * | C | 10 | U | 11 | G | 12 | cWW | cWw | cWW | |||
| 4 | IL_6ZDU_001 | 6ZDU | 0.8318 | 0 | C | Chains: C,D | A | 1283 | U | 1284 | A | 1285 | G | 1286 | * | C | 1268 | U | 1269 | U | 1270 | ncWW | cWW | ||||
| 5 | IL_4N0T_004 | 4N0T | 0.7507 | 0 | B | U6 snRNA | G | 78 | A | 79 | U | 80 | G | 81 | * | C | 66 | C | 67 | C | 68 | cWW | ncWW | cWW | cWW | ||
| 6 | IL_4P3T_002 | 4P3T | 0.8282 | 0 | B+A | RNA (23-mer) | G | 39 | A | 40 | A | 41 | G | 42 | * | C | 7 | C | 8 | C | 9 | cWW | ncWW | cWW | |||
| 7 | IL_4V9F_053 | 4V9F | 0.7869 | 0 | 0 | LSU rRNA | G | 1475 | A | 1476 | C | 1477 | U | 1478 | * | A | 1465 | C | 1466 | C | 1467 | cWW | cBW | cWW | |||
| 8 | IL_4PHY_003 | 4PHY | 0.8581 | 1 | A+B | RNA (26-MER) + RNA (20-mer) | G | 17 | A | 18 | U | 19 | C | 20 | * | G | 31 | A | 33 | C | 34 | cWW | cWw | ncWW | |||
| 9 | IL_4WSM_372 | 4WSM | 0.7998 | 0 | 1K | tRNA | G | 46 | C | 47 | C | 48 | C | 49 | * | G | 55 | G | 56 | C | 57 | cWW | ncWW | ncWW | |||
| 10 | IL_4PMI_005 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||18_445 | A | 42||||18_445 | A | 44||||18_445 | U | 45||||18_445 | * | A | 75||||18_445 | G | 76||||18_445 | G | 77||||18_445 | cWW | cWW | cWW | |||
| 11 | IL_4PMI_009 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||24_444 | A | 42||||24_444 | A | 44||||24_444 | U | 45||||24_444 | * | A | 75||||24_444 | G | 76||||24_444 | G | 77||||24_444 | cWW | cWW | cWW | |||
| 12 | IL_4PMI_003 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||13_455 | A | 42||||13_455 | A | 44||||13_455 | U | 45||||13_455 | * | A | 75||||13_455 | G | 76||||13_455 | G | 77||||13_455 | cWW | cWW | cWW | |||
| 13 | IL_4PMI_011 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||6_445 | A | 42||||6_445 | A | 44||||6_445 | U | 45||||6_445 | * | A | 75||||6_445 | G | 76||||6_445 | G | 77||||6_445 | cWW | cWW | cWW | |||
| 14 | IL_4PMI_001 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41||||12_455 | A | 42||||12_455 | A | 44||||12_455 | U | 45||||12_455 | * | A | 75||||12_455 | G | 76||||12_455 | G | 77||||12_455 | cWW | cWW | cWW | |||
| 15 | IL_4PMI_007 | 4PMI | 0.0000 | 1 | A | Rev-Response-Element RNA | U | 41 | A | 42 | A | 44 | U | 45 | * | A | 75 | G | 76 | G | 77 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAUAU*AGG | 6 |
| CGCU*AAAAG | 2 |
| UGUG*CUG | 1 |
| AUAG*CUU | 1 |
| GAUG*CCC | 1 |
| GAAG*CCC | 1 |
| GACU*ACC | 1 |
| GAUC*GAAC | 1 |
| GCCC*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*G | 6 |
| GC*AAA | 2 |
| GU*U | 1 |
| UA*U | 1 |
| AU*C | 1 |
| AA*C | 1 |
| AC*C | 1 |
| AU*AA | 1 |
| CC*G | 1 |
Release history
| Release | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (13)
- Decoding loop related (2)
- Basepair signature
- cWW-L-cWW-cWW
- Heat map statistics
- Min 0.18 | Avg 0.62 | Max 0.96
Coloring options: