Motif IL_82016.1 Version IL_82016.1 of this group appears in releases 4.0 to 4.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-8 | 2-3 | 4-7 | 5-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_096 | 7A0S | 0.1533 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | G | 2698 | G | 2699 | U | 2700 | A | 2701 | G | 2702 | * | U | 2666 | C | 2667 | C | 2670 | cWW | ncSH | ntHS | cWW |
| 2 | IL_4WF9_102 | 4WF9 | 0.0000 | 2 | UAA/GAN related, with intercalation | X | LSU rRNA | G | 2745 | G | 2746 | U | 2747 | A | 2748 | G | 2749 | * | U | 2714 | G | 2715 | C | 2718 | cWW | tHS | cWW | |
| 3 | IL_8B0X_163 | 8B0X | 0.1158 | 2 | UAA/GAN related, with intercalation (H) | a | LSU rRNA | G | 2722 | G | 2723 | U | 2724 | A | 2725 | G | 2726 | * | U | 2691 | G | 2692 | C | 2695 | cWW | tHS | cWW | |
| 4 | IL_9DFE_104 | 9DFE | 0.1176 | 2 | UAA/GAN related, with intercalation | 1A | LSU rRNA | G | 2718 | G | 2719 | U | 2720 | A | 2721 | G | 2722 | * | U | 2687 | U | 2688 | C | 2691 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAG*UCUCC | 1 |
| GGUAG*UGUAC | 1 |
| GGUAG*UGUUC | 1 |
| GGUAG*UUUCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*CUC | 1 |
| GUA*GUA | 1 |
| GUA*GUU | 1 |
| GUA*UUC | 1 |
Release history
| Release | 4.0 | 4.1 | 4.2 | 4.3 | 4.4 | 4.5 | 4.6 | 4.7 | 4.8 | 4.9 | 4.10 | 4.11 | 4.12 | 4.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2025-08-13 | 2025-09-10 | 2025-10-08 | 2025-11-05 | 2025-12-03 | 2025-12-31 | 2026-01-28 | 2026-02-25 | 2026-03-25 | 2026-04-22 | 2026-05-20 | 2026-06-17 | 2026-07-15 | 2026-08-12 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UAA/GAN related, with intercalation (3)
- UAA/GAN related, with intercalation (H) (1)
- Basepair signature
- cWW-L-tHS-L-cWW
- Heat map statistics
- Min 0.12 | Avg 0.11 | Max 0.19
Coloring options: