IL_82107.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2	break		3		4	1-4	2-3
1	IL_5M0H_004	5M0H	0.2737	2	Multiple bulged bases	A	ASH1 E3 (42 nt-TL/TLR)	G	8	U	11	*	A	35	C	36	ncWW	cWW
2	IL_4WF9_071	4WF9	0.2575	2	Major groove intercalation	X	LSU rRNA	U	1925	A	1928	*	U	1868	G	1869	cWW	cWW
3	IL_8C3A_400	8C3A	0.0000	2	Multiple bulged bases	CM	SSU rRNA	U	113	U	116	*	A	298	A	299	cWW	cWW
4	IL_4V88_392	4V88	0.1332	2	Multiple bulged bases	A6	SSU rRNA	U	113	U	116	*	A	300	A	301	cWW	cWW
5	IL_5WLH_001	5WLH	0.1614	2	Multiple bulged bases	B	pre-crRNA	C	-7	U	-4	*	A	-23	G	-22	cWW	cWW
6	IL_5W1H_001	5W1H	0.1738	2	Multiple bulged bases	B	mature crRNA	C	-7	U	-4	*	A	-23	G	-22	cWW	cWW
7	IL_5XWP_001	5XWP	0.1973	2	Multiple bulged bases	C	RNA (59-MER)	G	22	U	25	*	A	5	C	6	cWW	cWW
8	IL_7OS0_002	7OS0	0.1874	2	Multiple bulged bases	F	crRNA	G	29	U	32	*	A	11	C	12	cWW	cWW
9	IL_5WTK_001	5WTK	0.2183	2	Multiple bulged bases	B	RNA (58-MER)	G	20	U	23	*	A	3	C	4	cWW	cWW
10	IL_3MXH_004	3MXH	0.2553	2	Multiple bulged bases	R	Cyclic di-GMP-I riboswitch	U	81	C	84	*	G	56	G	57	cWW	cWW
11	IL_1FUF_003	1FUF	0.2977	2	Multiple bulged bases	B+A	RNA (14-mer)	U	19	C	22	*	G	9	G	10	cWW	cWW
12	IL_1FUF_002	1FUF	0.2783	2	Multiple bulged bases	A+B	RNA (14-mer)	U	5	C	8	*	G	23	G	24	cWW	cWW
13	IL_3IWN_004	3IWN	0.2282	2	Multiple bulged bases	A	Cyclic di-GMP-I riboswitch	U	76	C	79	*	G	46	G	47	cWW	cWW
14	IL_5J7L_315	5J7L	0.2199	2	Major groove intercalation	DA	LSU rRNA	U	1898	A	1901	*	U	1841	G	1842	cWW	cWW
15	IL_4V9F_067	4V9F	0.2100	2	Major groove intercalation	0	LSU rRNA	U	1939	A	1942	*	U	1897	G	1898	cWW	cWW
16	IL_5TBW_085	5TBW	0.2439	2	Major groove intercalation	1	LSU rRNA	U	2241	A	2244	*	U	2200	G	2201	cWW	cWW
17	IL_8C3A_090	8C3A	0.2110	2	Multiple bulged bases	1	LSU rRNA	U	2219	A	2222	*	U	2178	G	2179	cWW	cWW
18	IL_8SP9_001	8SP9	0.2012	2	Multiple bulged bases	C	Enterovirus 5' cloverleaf cis-acting replication element	C	76	G	79	*	C	106	G	107	cWW	cWW
19	IL_1U9S_003	1U9S	0.2280	2	Major groove intercalation	A	RNase P class A	C	224	A	227	*	U	116	G	117	cWW	cWW
20	IL_6IV9_001	6IV9	0.3562	2	Multiple bulged bases	B	crRNA (50-MER)	G	-9	U	-6	*	A	-29	C	-28	cWW	cWW
21	IL_1NBS_009	1NBS	0.3058	2	Major groove intercalation	B	RNase P class B	U	228	A	231	*	U	181	G	182	cWW	cWW
22	IL_1R3E_001	1R3E	0.3649	3	Multiple bulged bases	D+E	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
23	IL_1R3E_002	1R3E	0.3600	3	Multiple bulged bases	E+D	RNA (17-mer)	G	408	G	412	*	C	415	C	416	cWW	cWW
24	IL_7Q80_001	7Q80	0.4438	2	Multiple bulged bases	B+C	RNA 2 + RNA 3	C	13	G	14	*	C	35	G	38	cWW	cWW
25	IL_7Q80_003	7Q80	0.4899	2	Multiple bulged bases	E+F	RNA 2 + RNA 3	C	13	G	14	*	C	35	G	38	cWW	cWW
26	IL_7Q82_001	7Q82	0.4976	2	Multiple bulged bases	B+C	RNA 2 + RNA 3	C	13	G	14	*	C	35	G	38	cWW	cWW
27	IL_7V9E_001	7V9E	0.4978	2	Multiple bulged bases	A	RNA (68-MER)	C	11	G	12	*	C	38	G	41	cWW	cWW
28	IL_5TBW_136	5TBW	0.6891	2	Multiple bulged bases	1	LSU rRNA	C	3349	C	3350	*	G	3353	G	3356	ncWW	cWW
29	IL_7D3J_001	7D3J	0.5790	2	Multiple bulged bases	B	RNA (43-MER)	C	11	C	12	*	G	16	G	19	cWW	cWW
30	IL_7EU9_001	7EU9	0.5805	2	Multiple bulged bases	B	RNA (43-MER)	C	11	C	12	*	G	16	G	19	cWW	cWW
31	IL_8C3A_142	8C3A	0.5287	2	Multiple bulged bases	1	LSU rRNA	C	3314	C	3315	*	G	3318	G	3321	cWW	cWW
32	IL_3R2D_001	3R2D	0.2334	2	Multiple bulged bases	R+S	RNA (12-mer)	G	2	C	5	*	G	10	C	11	cWW	cWW
33	IL_6JXM_001	6JXM	0.3410	2	Multiple bulged bases	B	tRNA	G	53	U	56	*	A	34	C	35	cWW	cWW
34	IL_6LTU_001	6LTU	0.5245	2	Multiple bulged bases	B	RNA (56-mer)	C	11	U	12	*	A	16	G	19	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UAAA*UG	5
CG*CUAG	4
CC*GUUG	4
GACU*AC	3
UCGU*AA	2
CAAU*AG	2
UAGC*GG	2
UUUC*GG	2
GUUCG*CC	2
GAAU*AC	1
UCAA*UG	1
CUAG*CG	1
CAAA*UG	1
GUCU*AC	1
GCUC*GC	1
GAUU*AC	1
CU*AUUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*	9
*UU	5
*UA	4
AC*	3
CG*	2
AG*	2
UU*	2
UUC*	2
CA*	1
UA*	1
UC*	1
CU*	1
AU*	1

Release history

Release	3.89	3.90
Date	2024-10-09	2024-11-06
Status	New id, > 2 parents	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_82107.1 Version IL_82107.1 of this group appears in releases 3.89 to 3.90 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_82107.1 Version IL_82107.1 of this group appears in releases 3.89 to 3.90

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Csv

Json