#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_4KYY_0024KYY0.79610B+ARNA 17-merU8U9G10*U8U9G10cWWcWW
2 IL_3U5H_0723U5H0.74582525S rRNAG1623G1624A1625*U1818U1819C1822cWWncWWcWW
3 IL_3U5H_1513U5H0.7192185.8S rRNAU64A65A66*U93C94A96cWWncWScWW
4 IL_3U5F_0233U5F0.62290618S rRNAA420A421G422*C411A412U413cWWcWW
5 IL_3NJ7_0013NJ70.62360A+BRNA (10-mer)C3A4G5*C6A7G8cWWcWW
6 IL_4IOA_0294IOA0.60430Isolated near basepair (H)X LSU rRNAU917A918U919*A883C884A885cWWcWW
7 IL_406D_002406D0.34670Isolated cWH basepairA+ERNA (17-mer)U8||AG9||AG10||A*U25||AG26||AG27||AcWWncWHcWW
8 IL_3R1D_0023R1D0.18630Isolated cWH basepairB+ARNA (11-mer)C5G6G7*C5G6G7cWWcWHcWW
9 IL_4E5C_0014E5C0.15950Isolated cWH basepairA+BRNA (19-mer)C9G10G11*C9G10G11cWWcWHcWW
10 IL_3SJ2_0013SJ20.11300Isolated cWH basepairB+ARNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
11 IL_3SJ2_0023SJ20.11450Isolated cWH basepairB+ARNA (17-mer)C10G11G12*C10G11G12cWWcWHcWW
12 IL_3SJ2_0033SJ20.10400Isolated cWH basepairA+BRNA (19-mer) + RNA (17-mer)C13G14G15*C7G8G9cWWcWHcWW
13 IL_4BPP_0124BPP0.10150A18S RRNAC144G145A146*U156G157G158cWWcWHcWW
14 IL_3CZW_0023CZW0.00000Isolated cWH basepairXRNA (16-mer)U10G11A12*U7||||2_555G8||||2_555A9||||2_555cWWcWHcWW
15 IL_3CZW_0013CZW0.00000Isolated cWH basepairXRNA (16-mer)U10||||2_555G11||||2_555A12||||2_555*U7G8A9cWWcWHcWW
16 IL_2R22_0012R220.06850A+BRNA (13-mer)U6G7A8*U19G20A21cWWcWHcWW
17 IL_2AW7_0112AW70.22170A16S ribosomal RNAG144G145G146*C176G177C178cWWcWHcWW
18 IL_3U5F_0703U5F0.24190618S rRNAC1323G1324A1325*U1290G1291G1292cWWcWHcWW
19 IL_3U5F_0443U5F0.26020618S rRNAC848C849A850*U822G823G824cWWncWHcWW
20 IL_3U5F_0223U5F0.33310618S rRNAU406A407C408*G389G390A391cWWcWHcWW
21 IL_4BPP_0204BPP0.29970A18S RRNAU397A398C399*G380G381A382cWWcWHcWW
22 IL_420D_001420D0.29170B+ARNA (16-mer)A26A27U28*A5G6U7cWWcWHcWW
23 IL_420D_002420D0.30630A+BRNA (16-mer)A10A11U12*A21G22U23cWWcWHcWW
24 IL_3W3S_0033W3S0.26800Isolated cWH basepairBSelenocysteine transfer RNAA47|||NG47|||OC47|||P*G47|||AG47|||BU47|||CcWWcWHcWW
25 IL_2XXA_0112XXA0.41051G SSRP RNAA19G20C21*G78G79U81cWWcWHcWW
26 IL_2QEK_0022QEK0.81181A+BHIV-1 subtype F DIS genomic RNAC15A16C17*G7A9G10cWWcWW
27 IL_3V2F_0643V2F0.87214A23S Ribosomal RNAC1990U1991U1993*A1669C1670G1674cWWcWW
28 IL_2QBG_0652QBG0.86014B23S rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
29 IL_1S72_0621S720.87394Intercalated tWH (H)0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGG*CGG5
UGA*UGA3
CGA*UGG2
UAC*GGA2
AAU*AGU2
UUG*UUG1
GGA*UUUUC1
UAA*UCGA1
AAG*CAU1
CAG*CAG1
UAU*ACA1
UGG*UGG1
GGG*CGC1
CCA*UGG1
AGC*GGU1
AGC*GGGU1
CAC*GAAG1
ACUCUG*CUGU1
CUGU*ACUAGG1
CUGU*AUUCGG1
Non-Watson-Crick part of the motif
SequenceCounts
G*G13
A*G4
A*A2
U*U1
G*UUU1
A*CG1
A*C1
C*G1
G*GG1
A*AA1
CUCU*UG1
UG*CUAG1
UG*UUCG1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
Status> 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_82444.1Only in the parent motif
IL_06390.3
Compare
IL_420D_002, IL_420D_001, IL_2AW7_011, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_4KYY_002, IL_4BPP_020, IL_3V2F_064, IL_4BPP_012, IL_2QBG_065, IL_2QEK_002, IL_1S72_062IL_3V2F_025, IL_1GID_006, IL_1X8W_005, IL_1GID_013
IL_47174.7
Compare
IL_2QEK_002, IL_3V2F_064, IL_2QBG_065IL_420D_002, IL_420D_001, IL_4BPP_020, IL_2AW7_011, IL_1S72_062, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5H_151, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_4KYY_002, IL_3U5F_070, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_3KTW_002, IL_2AW7_052, IL_1NLC_002, IL_2O3X_004, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4IOA_078, IL_1O9M_003, IL_3U5H_109, IL_1S72_047, IL_2XZM_034, IL_2XZM_036, IL_2XZM_037, IL_3U5H_076, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1FJG_058, IL_3V2F_053, IL_1T0E_002, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_2XZM_001, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_2XZM_085, IL_3CUN_002, IL_2XZM_086, IL_2XZM_081, IL_1XJR_003, IL_2QBG_085, IL_2QBG_083, IL_4IOA_054, IL_3TD0_006, IL_3U5H_008, IL_2XZM_012, IL_4FNJ_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_2XZM_015, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_1U9S_007, IL_2O3V_004, IL_3TD0_002, IL_2O3V_001, IL_3U5H_087, IL_2XZM_090, IL_3BNQ_001, IL_3BNQ_006, IL_3NJ7_002, IL_2Q1R_002, IL_1FJG_006, IL_4IOA_104, IL_4A1B_061, IL_2XZM_069, IL_2QBG_020, IL_1MFQ_003, IL_3U5H_017, IL_4IOA_109, IL_4IOA_025, IL_2XZM_060, IL_4KYY_001, IL_4KYY_003, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_3U5H_028, IL_3UMY_001, IL_5MSF_001, IL_3V2F_081, IL_3V2F_080, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_3U5F_082, IL_4IOA_030, IL_2XZM_075, IL_3U5F_089, IL_4AOB_005, IL_2XZM_072, IL_1MFQ_002, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_3IVK_004, IL_405D_002, IL_1MWL_004, IL_3V2F_094, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_2XZM_043, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1FJG_010, IL_3RW6_004, IL_3U5H_133, IL_3V2F_015, IL_3DIR_006, IL_3V2F_017, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_4A1B_034, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_2XZM_058, IL_2XZM_020, IL_3U5F_065, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_3U5H_049, IL_3SZX_001, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_1U6B_005, IL_3TD0_001, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_1ZX7_002, IL_3U5H_114, IL_3V2F_034, IL_3U5H_116, IL_3U5H_118, IL_4A1B_107, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_3FO4_001, IL_1S72_024, IL_4IOA_091, IL_2AW7_062
IL_40090.4
Compare
IL_4KYY_002IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_2QEK_002, IL_1S72_062, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_2QBG_065, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_2AW7_049, IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_3U5F_093, IL_4IOA_043, IL_2QBG_045, IL_3V2F_030, IL_3U5F_067, IL_3V2F_042, IL_1FJG_041
IL_21304.2
Compare
IL_1S72_062IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_2QEK_002, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_2QBG_065, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_4KYY_002, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_2XZM_006, IL_2QBG_082, IL_3V2F_079, IL_3U5H_085, IL_4IOA_077, IL_3U5H_100, IL_1S72_076, IL_3V2F_012, IL_2XZM_064, IL_4A1B_081

Children motifs

Child motifCommon motif instancesOnly in IL_82444.1Only in the child motif
IL_82444.2
Compare
IL_420D_002, IL_420D_001, IL_4BPP_020, IL_2AW7_011, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_2QEK_002, IL_1S72_062, IL_3V2F_064, IL_4KYY_002, IL_2QBG_065IL_1GID_006, IL_4NVV_027, IL_1X8W_005, IL_1GID_013
IL_78141.1
Compare
IL_2QEK_002, IL_4KYY_002, IL_2QBG_065IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_1S72_062, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5H_151, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5F_070, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_1O9M_003, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_4FNJ_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5F_074, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062
IL_71837.1
Compare
IL_1S72_062IL_420D_002, IL_420D_001, IL_4BPP_020, IL_3V2F_064, IL_2AW7_011, IL_2QEK_002, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_2QBG_065, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_4KYY_002, IL_3U5H_151, IL_3CZW_002, IL_3CZW_001, IL_2R22_001, IL_2XXA_011IL_2QBG_040, IL_4BPP_006, IL_3U5F_006, IL_3U5H_085, IL_4A1C_001, IL_4A1B_081, IL_4IOA_037
Annotations
  • (18)
  • Isolated cWH basepair (9)
  • Intercalated tWH (H) (1)
  • Isolated near basepair (H) (1)
  • Basepair signature
    cWW-cWH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.56 | Max 1.06
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