Motif IL_82453.1 Version IL_82453.1 of this group appears in releases 4.0 to 4.3
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8GLP_259 | 8GLP | 0.1345 | 1 | S2 | SSU rRNA | U | 1329 | G | 1330 | A | 1332 | U | 1333 | * | A | 1498 | U | 1499 | G | 1500 | cWW | ncWS | cWW | |
| 2 | IL_4LFB_044 | 4LFB | 0.0000 | 1 | Isolated cWS basepair | A | SSU rRNA | U | 1052 | G | 1053 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW |
| 3 | IL_8B0X_046 | 8B0X | 0.0695 | 1 | A | SSU rRNA | U | 1052 | G | 1053 | A | 1055 | U | 1056 | * | A | 1204 | U | 1205 | G | 1206 | cWW | ncWS | cWW | |
| 4 | IL_8CRE_452 | 8CRE | 0.1146 | 1 | CM | SSU rRNA | U | 1257 | G | 1258 | A | 1260 | U | 1261 | * | A | 1422 | U | 1423 | G | 1424 | cWW | ncWS | cWW | |
| 5 | IL_8P9A_438 | 8P9A | 0.1564 | 1 | sR | SSU rRNA | U | 1272 | G | 1273 | A | 1275 | U | 1276 | * | A | 1436 | U | 1437 | G | 1438 | cWW | ncWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGCAU*AUG | 5 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA*U | 5 |
- Annotations
-
- (4)
- Isolated cWS basepair (1)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.17
Coloring options: