Motif IL_83339.1 Version IL_83339.1 of this group appears in releases 1.15 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3ZP8_002 | 3ZP8 | 0.7381 | 1 | A+B | HAMMERHEAD RIBOZYME, ENZYME STRAND + HAMMERHEAD RIBOZYME, SUBSTRATE STRAND | G | 5 | U | 6 | A | 7 | U | 9 | * | A | 12 | U | 13 | C | 14 | cWW | cWW |
| 2 | IL_1QA6_001 | 1QA6 | 0.0000 | 1 | C | LSU rRNA | C | 126 | A | 127 | U | 128 | C | 129 | * | G | 109 | U | 110 | G | 112 | cWW | cWW |
| 3 | IL_2QBG_043 | 2QBG | 0.1682 | 1 | B | LSU rRNA | C | 1076 | A | 1077 | U | 1078 | C | 1079 | * | G | 1059 | U | 1060 | G | 1062 | cWW | cWW |
| 4 | IL_4CUX_018 | 4CUX | 0.9037 | 0 | 2 | SSU rRNA | C | 270 | A | 271 | U | 272 | G | 273 | * | U | 283 | G | 284 | G | 285 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUACU*AUC | 1 |
| CAUC*GUAG | 1 |
| CAUC*GUUG | 1 |
| CAUG*UGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAC*U | 1 |
| AU*UA | 1 |
| AU*UU | 1 |
| AU*G | 1 |
Release history
| Release | 1.15 | 1.17 | 1.18 |
|---|---|---|---|
| Date | 2014-06-20 | 2014-09-04 | 2014-10-07 |
| Status | New id, 2 parents | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_83339.1 | Only in the parent motif |
|---|---|---|---|
| IL_42251.1 Compare | IL_2QBG_043, IL_1QA6_001 | IL_3ZP8_002, IL_4CUX_018 | IL_4FNJ_003, IL_1U6B_009 |
| IL_64589.1 Compare | IL_3ZP8_002 | IL_2QBG_043, IL_1QA6_001, IL_4CUX_018 |
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-L-cWW
- Heat map statistics
- Min 0.17 | Avg 0.56 | Max 0.97
Coloring options: