Motif IL_84044.1 Version IL_84044.1 of this group appears in releases 4.0 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-5 | 5-11 | 6-10 | 8-9 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8B0X_037 | 8B0X | 0.1395 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | A | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 2 | IL_4LFB_034 | 4LFB | 0.0980 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | A | SSU rRNA | G | 887 | G | 888 | A | 889 | G | 890 | U | 891 | A | 892 | C | 893 | G | 894 | * | U | 905 | G | 906 | A | 907 | A | 908 | A | 909 | C | 910 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 3 | IL_8P9A_428 | 8P9A | 0.0000 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | sR | SSU rRNA | G | 1111 | G | 1112 | A | 1113 | G | 1114 | U | 1115 | A | 1116 | U | 1117 | G | 1118 | * | U | 1129 | G | 1130 | A | 1131 | A | 1132 | A | 1133 | C | 1134 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 4 | IL_8CRE_442 | 8CRE | 0.0733 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | CM | SSU rRNA | G | 1096 | G | 1097 | A | 1098 | G | 1099 | U | 1100 | A | 1101 | U | 1102 | G | 1103 | * | U | 1114 | G | 1115 | A | 1116 | A | 1117 | A | 1118 | C | 1119 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
| 5 | IL_8GLP_247 | 8GLP | 0.1701 | 0 | 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) | S2 | SSU rRNA | G | 1168 | G | 1169 | A | 1170 | G | 1171 | U | 1172 | A | 1173 | PSU | 1174 | G | 1175 | * | U | 1186 | G | 1187 | A | 1188 | A | 1189 | A | 1190 | C | 1191 | cWW | tSH | tHH | cSH | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAGUAUG*UGAAAC | 2 |
| GGAGUACG*UAAAAC | 1 |
| GGAGUACG*UGAAAC | 1 |
| GGAGUAG*UGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAGUAU*GAAA | 2 |
| GAGUAC*AAAA | 1 |
| GAGUAC*GAAA | 1 |
| GAGUA(PSU)*GAAA | 1 |
- Annotations
-
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (3)
- 8x6 Sarcin-Ricin with inserted Y; G-bulge (H) (2)
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Heat map statistics
- Min 0.07 | Avg 0.11 | Max 0.22
Coloring options: