Motif IL_84694.2 Version IL_84694.2 of this group appears in releases 3.95 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 4-13 | 5-12 | 6-11 | 7-10 | 8-9 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8P9A_234 | 8P9A | 0.0537 | 1 | tSH-tHW-tHH-tHS (H) | AR | LSU rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | |
| 2 | IL_8CRE_005 | 8CRE | 0.0000 | 1 | 1 | LSU rRNA | C | 30 | U | 31 | G | 32 | A | 33 | A | 34 | C | 35 | U | 36 | U | 37 | * | A | 44 | U | 45 | C | 46 | A | 47 | U | 49 | A | 50 | A | 51 | G | 52 | cWW | tSH | tHW | tHH | tHS | cWw | cWW | ||
| 3 | IL_4WF9_008 | 4WF9 | 0.2359 | 1 | 9x8 Sarcin-Ricin; G-bulge | X | LSU rRNA | G | 190 | A | 191 | G | 192 | A | 193 | A | 194 | C | 195 | U | 196 | G | 197 | * | C | 204 | U | 205 | U | 206 | A | 207 | U | 209 | A | 210 | C | 211 | C | 212 | cWW | cWWa | tSH | tHW | tHH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAAUAAG | 2 |
| GAGAACUG*CUUAGUACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAAUAA | 2 |
| AGAACU*UUAGUAC | 1 |
- Annotations
-
- 9x8 Sarcin-Ricin; G-bulge (1)
- (1)
- tSH-tHW-tHH-tHS (H) (1)
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.12 | Max 0.25
Coloring options: