#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5break 6 7 8 9 10 111-112-93-84-75-65-7
1 IL_1S72_0251S720.000020 LSU rRNAG765A766A767U768C769*G892C893A895C896A897C899cWWtHWtHWcWW
2 IL_2ZJR_0142ZJR0.34792tHW-tHW cross-strand stack (H)X LSU rRNAG687A688A689A690C691*G812A813A815U816A817C819cWWtHWntWWntWWcWWntWW
3 IL_3F1H_0173F1H0.35152A23S RRNAG674A675A676A677C678*G799A800A802U803A804C806cWWtHWntWWtWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAAC*GAGAUAGC2
GAAUC*GCAACAGC1
Non-Watson-Crick part of the motif
SequenceCounts
AAA*AGAUAG2
AAU*CAACAG1

Release history

Release0.10.20.30.4
Date2011-12-082011-12-082011-12-082011-12-08
StatusNew id, no parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

Child motifCommon motif instancesOnly in IL_85104.1Only in the child motif
IL_20679.1
Compare
IL_2ZJR_014IL_1S72_025, IL_3F1H_017IL_3PYO_017
IL_07220.1
Compare
IL_1S72_025IL_3F1H_017, IL_2ZJR_014
Annotations
  • (2)
  • tHW-tHW cross-strand stack (H) (1)
  • Basepair signature
    Heat map statistics
    Min 0.12 | Avg 0.18 | Max 0.35
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