Motif IL_85104.1 Version IL_85104.1 of this group appears in releases 0.1 to 0.4
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | 5-7 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_1S72_025 | 1S72 | 0.0000 | 2 | 0 | LSU rRNA | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | * | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | cWW | tHW | tHW | cWW | |||
2 | IL_2ZJR_014 | 2ZJR | 0.3479 | 2 | tHW-tHW cross-strand stack (H) | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | ntWW | cWW | ntWW |
3 | IL_3F1H_017 | 3F1H | 0.3515 | 2 | A | 23S RRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | ntWW | tWW | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAAAC*GAGAUAGC | 2 |
GAAUC*GCAACAGC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AAA*AGAUAG | 2 |
AAU*CAACAG | 1 |
Release history
Release | 0.1 | 0.2 | 0.3 | 0.4 |
---|---|---|---|---|
Date | 2011-12-08 | 2011-12-08 | 2011-12-08 | 2011-12-08 |
Status | New id, no parents | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in IL_85104.1 | Only in the child motif |
---|---|---|---|
IL_20679.1 Compare | IL_2ZJR_014 | IL_1S72_025, IL_3F1H_017 | IL_3PYO_017 |
IL_07220.1 Compare | IL_1S72_025 | IL_3F1H_017, IL_2ZJR_014 |
- Annotations
-
- (2)
- tHW-tHW cross-strand stack (H) (1)
- Basepair signature
- Heat map statistics
- Min 0.12 | Avg 0.18 | Max 0.35
Coloring options: